PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033208.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 89aa    MW: 10267.4 Da    PI: 7.3536
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033208.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-081458344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+ E +l+ +a +++ ++   +W  Ia+ +g  ++++++k ++
      CCG033208.1 14 SWTPRENKLFEKALALFDKDtpdRWQNIAKAVGGVKSAEEVKRHY 58
                     7********************************668********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-4760IPR009057Homeodomain-like
PROSITE profilePS5129310.8191066IPR017884SANT domain
SMARTSM007172.2E-81164IPR001005SANT/Myb domain
SuperFamilySSF466898.21E-121370IPR009057Homeodomain-like
CDDcd001678.43E-71458No hitNo description
PfamPF002495.0E-71458IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSSYQTPRN SSSSWTPREN KLFEKALALF DKDTPDRWQN IAKAVGGVKS AEEVKRHYEI  60
LIEDLKYIES GRVPIPNYRS CSSTNEEER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31983578RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037518.17e-61PREDICTED: protein RADIALIS-like 4 isoform X1
SwissprotQ1A1732e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3N7F1371e-53A0A3N7F137_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16320.12e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-35RAD-like 6