PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033305.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 186aa MW: 21470.9 Da PI: 8.85

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033305.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	1.9e-33	99	157	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s+fprsYYrCt +gC+vkk+v+r+++d+++v++tYeg H+h+ CCG033305.1 99 LDDGYRWRKYGQKTVKNSKFPRSYYRCTNNGCNVKKQVQRNSKDEEIVVTTYEGMHTHP 157 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-34	84	157	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-29	91	158	IPR003657	WRKY domain
PROSITE profile	PS50811	30.745	94	159	IPR003657	WRKY domain
SMART	SM00774	1.7E-38	99	158	IPR003657	WRKY domain
Pfam	PF03106	1.2E-27	100	157	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MQMEKYQICL PVSDPSSPSG SPSSLNMANP SIYFHGDNEN GVRPESRTQH SDAKHSDPQT 60 SRVSSNSEIR VKPGMRGGDN NEFRKHKYAF QTRSQVDILD DGYRWRKYGQ KTVKNSKFPR 120 SYYRCTNNGC NVKKQVQRNS KDEEIVVTTY EGMHTHPIEK CTDNIEDILR QMQTYTPFEI 180 MPGHFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	89	158	7	76	Probable WRKY transcription factor 4
2lex_A	4e-27	89	158	7	76	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208943	0.0	AC208943.1 Populus trichocarpa clone JGIACSB1089-H10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044111.1	1e-140	PREDICTED: probable WRKY transcription factor 75
TrEMBL	B9I3U6	1e-122	B9I3U6_POPTR; Uncharacterized protein
STRING	POPTR_0012s10290.1	1e-123	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	1e-51	WRKY DNA-binding protein 75