PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033362.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 567aa    MW: 65126 Da    PI: 7.6131
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033362.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30261319259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D ++WrKYGqK++kgs++pr YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  CCG033362.1 261 SDLWAWRKYGQKPIKGSPYPRDYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 319
                  699************************998****************************7 PP
2NAM93.33.9e-2941652419128
          NAM  19 LkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk 115
                  L +k+ +k++el ++i++vd yk++ +++p+ +  ++  +w fF +rd++y+tg r+nr+t++g Wkatg+d++v+  ++++vg+kktL+fy+grap+
  CCG033362.1 416 LVRKICEKRFEL-DIIRDVDDYKWDSQEFPElSPLESGWQWNFFGPRDRRYHTGARSNRKTRQGWWKATGRDRSVVY-TSRKVGVKKTLAFYRGRAPR 511
                  779999999999.99***************42333345599************************************.9999**************** PP

          NAM 116 gektdWvmheyrl 128
                  ge+tdW m+ey+l
  CCG033362.1 512 GERTDWKMQEYTL 524
                  ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010412.98883226IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002550.002284226IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101402.7E-585214IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015825.8E-13122230IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522001.07E-14122223IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:2.20.25.805.4E-31254321IPR003657WRKY domain
PROSITE profilePS5081132.638255321IPR003657WRKY domain
SuperFamilySSF1182903.27E-26258321IPR003657WRKY domain
SMARTSM007742.4E-36260320IPR003657WRKY domain
PfamPF031061.8E-25262319IPR003657WRKY domain
PROSITE profilePS5100531.335398547IPR003441NAC domain
SuperFamilySSF1019415.62E-33416547IPR003441NAC domain
PfamPF023651.5E-10428524IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MCISCNSIQV LSDHIWLFYL SFDHLKELKE WKHESFSNIE LSFRSFQPGV KVKNCGVCLL  60
SSVDITPRPS SAHFIVTSKE AASSFKAYLA FSSWYHQWKA NVFPGIRVED RARRFVVPVM  120
KELEKVMTIR SRLFEAIEES GLSIIIFARD CASLTWCFEE LVKIVGFMDE MRSDTVFPVS  180
CDVEQSKTDD QTESYTIVFD KNEENSRENE EKVQRWLDIL SQVEISSGSR SVERKSQAKK  240
VVCIPAPAAA NSRSSGEVVP SDLWAWRKYG QKPIKGSPYP RDYYRCSSSK GCSARKQVER  300
SRNDPNMLVI TYTSEHNHPW PTQRNALAGS TRSQPTKSNA ASKSSTGAEA QKTANTKEDQ  360
KESSNDTSSP TDIIGGSSTA SASVKEESDD IEKQMEMDDN EFSEGFSQSY CWERQLVRKI  420
CEKRFELDII RDVDDYKWDS QEFPELSPLE SGWQWNFFGP RDRRYHTGAR SNRKTRQGWW  480
KATGRDRSVV YTSRKVGVKK TLAFYRGRAP RGERTDWKMQ EYTLSEEELR GRANVQDFYS  540
LHKLCKKGEM DFMEIDLGPQ PNISETV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2641352430140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5695710.0KJ569571.1 Populus trichocarpa WRKY66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011972.10.0PREDICTED: WRKY transcription factor 6-like isoform X3
TrEMBLQ19PM51e-157Q19PM5_POPTR; TIR-NBS-TIR-TIR-WRKY type disease resistance protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-67WRKY DNA-binding protein 35