PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033385.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 377aa    MW: 40581.1 Da    PI: 7.1082
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033385.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.33e-12115159347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qk+
      CCG033385.1 115 PWTEDEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKF 159
                      7******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.649108164IPR017930Myb domain
SuperFamilySSF466895.77E-16110165IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-18111163IPR006447Myb domain, plants
SMARTSM007173.1E-8112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10113155IPR009057Homeodomain-like
PfamPF002492.9E-9115158IPR001005SANT/Myb domain
CDDcd001674.48E-8115160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RSSLASSSSS PLSGVKLFGV RLTDGSIIKK SASMGSLSGH  60
YHSSSSAAAS PNPDSPQSDH VRDSAHVPDG YLSDDPAAHA SCSTNQRGDR KKGIPWTEDE  120
HRLFLIGLQK LGKGDWRGIA RNFVVSRTPT QVASHAQKFF IRQSNATRRK RRSSLFDMVP  180
EMATDPQPVP EEQEFPSSSQ AGDNGNADSL PSLNLSLKPE FEPMDIGSQE LVKEPDKTVM  240
GLSEIKSIVP SSNEFSTVVS GSSEFTAVPG FFPAYMPVPY PYWPSNTTSF EEGTGAAASH  300
HEVLKPVPII PKEPFIVDEL VGMSHLHLGE TDRHHREPSP LSLKLIGEPS RQSAFHASAP  360
AGGSDLSNGK ASSIQAV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482410.0EF148241.1 Populus trichocarpa x Populus deltoides clone WS01312_B18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012039.10.0PREDICTED: uncharacterized protein LOC105116394
TrEMBLA0A2K2B1N90.0A0A2K2B1N9_POPTR; Uncharacterized protein
STRINGXP_002515966.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-96MYB_related family protein