PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033424.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 333aa    MW: 37687.9 Da    PI: 9.8732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033424.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.7e-172165146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg W + Ed++l ++v+q+G  +W+ Ia++++ gR++k+c++rw +
      CCG033424.1 21 RGHWRPAEDDKLRQLVEQYGAQNWNDIAEKLQ-GRSGKSCRLRWVN 65
                     899*****************************.***********88 PP
2Myb_DNA-binding58.91.1e-1873116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
      CCG033424.1  73 RRPFSEEEEERLLAAHHVHGNK-WALIARLFP-GRTDNAVKNHWHV 116
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.3241667IPR017930Myb domain
SMARTSM007173.8E-142069IPR001005SANT/Myb domain
SuperFamilySSF466892.4E-2920114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-262274IPR009057Homeodomain-like
CDDcd001676.64E-132465No hitNo description
PfamPF139218.8E-182484No hitNo description
PROSITE profilePS5129427.53868122IPR017930Myb domain
SMARTSM007171.1E-1572120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2175121IPR009057Homeodomain-like
CDDcd001672.64E-784115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEQYSLAGNS SDDAKSAACP RGHWRPAEDD KLRQLVEQYG AQNWNDIAEK LQGRSGKSCR  60
LRWVNQLDPR INRRPFSEEE EERLLAAHHV HGNKWALIAR LFPGRTDNAV KNHWHVIMAR  120
KQRELSKLCG KRSYQDRVSD SNPPFSNSHA RKSRTQEMFS TRIGFEGSRE CEFRNASKDR  180
TFSISPSSSS PSWNSLPSTL AASNNSCLVD LSRRKGRDNY FNSSLLCTTE SSKVSDQSIY  240
RYHMNSSVRS SNWSSSKFGL PNCRKVVPSP LGSIKLGDDN GNHGMIKKEL CCHNSSTLKN  300
MRATSNHQEQ GDHESIRHKD VPFIDFLGVG ISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30211217107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164550.0AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027396.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A2K2BEX40.0A0A2K2BEX4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-60myb domain protein 52