PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033611.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 135aa    MW: 15630.4 Da    PI: 10.9852
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033611.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.39.7e-1215102188
                  EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                  f kvlt+ d    +rl+lp kf++     +g++ +  +    desg +W+++++ rkk+    vl+k W  Fv+ ++Lk+gD v F  ++++
  CCG033611.1  15 FSKVLTKTDIR--KRLSLPLKFFKPLpslKGSHVR--DFPAIDESGFVWTFQCSTRKKGHPkPVLSKDWLAFVRHKELKVGDRVKFFKEKDQ 102
                  66777554444..469*******888977555555..68899***********765554447**********************99755443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-165116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-1411103IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00915112IPR003340B3 DNA binding domain
CDDcd100174.42E-1415103No hitNo description
PfamPF023621.7E-815106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MQQSKQKKKK ETSKFSKVLT KTDIRKRLSL PLKFFKPLPS LKGSHVRDFP AIDESGFVWT  60
FQCSTRKKGH PKPVLSKDWL AFVRHKELKV GDRVKFFKEK DQSGTATPFF RVEAEKEIKI  120
FGVIFGYSPI LAPFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012048.12e-92PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9I5A24e-76B9I5A2_POPTR; Uncharacterized protein
STRINGPOPTR_0012s02070.17e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778