PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033631.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 396aa    MW: 43276 Da    PI: 10.7999
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033631.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI            R+  ++k++w++
      CCG033631.1  5 KQKWTAEEEAALKAGVLKHGTGKWRTILVDPEfsavlRLRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.268161IPR017930Myb domain
SuperFamilySSF466891.2E-14262IPR009057Homeodomain-like
SMARTSM007179.2E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-12456IPR009057Homeodomain-like
PfamPF002492.9E-7555IPR001005SANT/Myb domain
CDDcd116602.57E-15657No hitNo description
SMARTSM0071713107162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-7115159IPR009057Homeodomain-like
PROSITE profilePS500904.89115160IPR017877Myb-like domain
SuperFamilySSF466897.1E-10115191IPR009057Homeodomain-like
CDDcd116602.39E-11115160No hitNo description
SMARTSM005265.5E-10219285IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150419.316222290IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.25E-14225299IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.109.9E-13226292IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.9E-8227283IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV LKHGTGKWRT ILVDPEFSAV LRLRSNVDLK DKWRNINVTA  60
IWGSRKKAKI ALKRRPLTPK REENAKALST VVQTNEEVVD AKPLAFASGT PGNGEEAALK  120
AGVLKHGTGK WRTILVDPEF SAVLRLRSNV DLKDKWRNIN VTAIWGSRKK AKIALKRRPL  180
TPKREENAKA LSTVVQTNEE VVDAKPLAFA SGTPGNGGPK DLLARLDNLI LEAITTLKEP  240
TGSDRASIAL YIQEKYWAPM NLRKILGGKL KHLTANGNLI MVQHKYRIAP SSTFSEGRKN  300
HALPEGKRKD ALKLEKSKNK ILTKAHVGRD PSKIQGMTAL EAAASAAKAV AEAESAIADA  360
EAAAREAEKA EAEAEAAQVF AKAAMEAFKL RARHTW
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1484590.0EF148459.1 Populus trichocarpa x Populus deltoides clone WS01315_H07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012071.11e-170PREDICTED: telomere repeat-binding factor 2-like
SwissprotQ9FJW52e-64TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLA0A2K1ZLY41e-163A0A2K1ZLY4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s14920.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.29e-60MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]