PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG033675.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 329aa    MW: 36433 Da    PI: 6.0333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG033675.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131463148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ + + + g   +W + +++ g++R++k+c++rw++yl
      CCG033675.2 14 RGPWSPEEDATLKSYLETHRGTggNWIALPQKAGLKRCGKSCRLRWLNYL 63
                     89******************99**************************97 PP
2Myb_DNA-binding38.72.3e-1270135246
                      SSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  +  q+G++                       W++Ia+ ++ gRt++++k++w++
      CCG033675.2  70 GGFTEEEDNIICALYSQMGSRqvlvyfvsyfwsmfysilhnyvLWSLIASQLP-GRTDNDVKNYWNT 135
                      569**************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.124967IPR017930Myb domain
SMARTSM007172.1E-91365IPR001005SANT/Myb domain
PfamPF002498.6E-131463IPR001005SANT/Myb domain
SuperFamilySSF466894.3E-191467IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-231570IPR009057Homeodomain-like
CDDcd001671.25E-61663No hitNo description
SMARTSM007176.2E-1068139IPR001005SANT/Myb domain
PROSITE profilePS5129410.27368141IPR017930Myb domain
PfamPF002491.3E-970135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2171141IPR009057Homeodomain-like
CDDcd001675.45E-872137No hitNo description
SuperFamilySSF466894.3E-19109138IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKSYLE THRGTGGNWI ALPQKAGLKR CGKSCRLRWL  60
NYLRPDIKHG GFTEEEDNII CALYSQMGSR QVLVYFVSYF WSMFYSILHN YVLWSLIASQ  120
LPGRTDNDVK NYWNTKLKRK ILAGKINISI RNKSINAPTT IANILTSPVL YGPKAETEST  180
ITFSDYSLTQ SSGTLPTLSD IGYGPFINST RQNLSPDQFQ FSNFPGVMDM SEFGATSMNS  240
SHIVSPSQEC SSISDSSSLA MDNKGLPLPS NGGLEGAGLL MDSEFGLPGD FFHGLLFQDE  300
ASEAAANCSQ YFADFGYVDM KPQELTNQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-20141414105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-20141414105C-Myb DNA-Binding Domain
1msf_C2e-20141414105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011012117.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A2K1WWJ40.0A0A2K1WWJ4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s04710.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-68myb domain protein 84