PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG033968.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 244aa MW: 28390.3 Da PI: 7.304

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG033968.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	6.7e-26	135	183	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++le+++k+F++pi++AA+e++v+lTvLK++CR++ I+RWPhRkiksl CCG033968.1 135 ALQLEEIQKHFNMPITQAAREMKVGLTVLKKRCRELKIMRWPHRKIKSL 183 689********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	118	205	IPR003035	RWP-RK domain
Pfam	PF02042	5.6E-23	136	183	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MENPPDFDVW DLGVDDQDTF QKISELPHFE SLFDPSNINQ FKHLEDISSD NIFSESNLES 60 WYNQENAYVD TKPVLNPGIH ASFGQNLDNN VIKGDHHLKG FSMFLVQSDC ASSSSVKEEE 120 EEESRKMSGR KRSVALQLEE IQKHFNMPIT QAAREMKVGL TVLKKRCREL KIMRWPHRKI 180 KSLNSLINNV KEMGLSEHDT IMLKEHKRLI EKLPDLELTE RTKKLRQACF KANYKKRRLS 240 AAYP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011044734.1	0.0	PREDICTED: protein RKD4
TrEMBL	A0A2K1XGA6	1e-157	A0A2K1XGA6_POPTR; Uncharacterized protein
STRING	POPTR_0015s01410.1	1e-158	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-40	RWP-RK domain-containing protein