PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG034157.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 489aa MW: 53842.4 Da PI: 9.4441

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG034157.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.4e-05	95	117	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H CCG034157.1 95 FVCEICNKGFQRDQNLQLHRRGH 117 89*******************88 PP
2	zf-C2H2	12.2	0.00055	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ CCG034157.1 171 WKCEKCSKIYAVQSDWKAHSKTC 193 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.6E-5	94	117	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.05E-6	94	117	No hit	No description
SMART	SM00355	0.017	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	95	117	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.8E-5	95	117	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	97	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	136	166	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-4	159	192	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.05E-6	166	191	No hit	No description
SMART	SM00355	170	171	191	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MFPAAMSNST SLSEEASVSS GTRIQDFGSL NQLASTISPL QQQQQQQQQQ QRTIKKKRNL 60 PGKTIKKKRN LPGNPDPDAE VIALSPKTLL TTNRFVCEIC NKGFQRDQNL QLHRRGHNLP 120 WKLKQRNSKE IKKKAYVCPE PTCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY 180 AVQSDWKAHS KTCGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARLS AHQLIISQNP 240 NAHALLLQNP LQTHHPHSLF STPAHHQISF TSPWDPPHHQ NPCSNNPQNP VHIKPETTGH 300 FQISASLLQE PPLAMPSHKG LLAPTFQSLS NAATSQAPSH HLSATALLQK AASVGATQTS 360 VGHSHMTQLD MGELGSAGQV HVDSVSHVSQ GPSYNLNSLA TWQKSDRLTR DFLGLTAPEC 420 GDHHGHAASN ANGSGGSVNV SMNVREILTY TGGVGFHQQQ YNERDHSLLK PHGGFGFAQP 480 SASEAWGDC

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MFPAAMSNST SLSEEASVSS GTRIQDFGSL NQLASTISPL QQQQQQQQQQ QRTIKKKRNL  60
PGKTIKKKRN LPGNPDPDAE VIALSPKTLL TTNRFVCEIC NKGFQRDQNL QLHRRGHNLP  120
WKLKQRNSKE IKKKAYVCPE PTCVHHHPSR ALGDLTGIKK HYCRKHGEKK WKCEKCSKIY  180
AVQSDWKAHS KTCGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARLS AHQLIISQNP  240
NAHALLLQNP LQTHHPHSLF STPAHHQISF TSPWDPPHHQ NPCSNNPQNP VHIKPETTGH  300
FQISASLLQE PPLAMPSHKG LLAPTFQSLS NAATSQAPSH HLSATALLQK AASVGATQTS  360
VGHSHMTQLD MGELGSAGQV HVDSVSHVSQ GPSYNLNSLA TWQKSDRLTR DFLGLTAPEC  420
GDHHGHAASN ANGSGGSVNV SMNVREILTY TGGVGFHQQQ YNERDHSLLK PHGGFGFAQP  480
SASEAWGDC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	167	231	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-35	167	231	3	67	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	68	KKKRNLPGKTIKKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM461724	1e-119	AM461724.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X124416.7, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011012272.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	O22759	1e-129	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	B9GSI6	0.0	B9GSI6_POPTR; Uncharacterized protein
STRING	POPTR_0002s04880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-125	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]