PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG034227.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NF-YC

Protein Properties

Length: 128aa MW: 14823.7 Da PI: 4.9384

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG034227.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55	1.8e-17	73	125	45	97
NF-YC 45 vllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 + + acelfileltlr+wl++ ++k r+l+++di+ a+ + ++ dfl + p CCG034227.1 73 ISNATACELFILELTLRAWLQTTDCKHRALQRCDISRATRQENMLDFLNRVAP 125 55689*******************************************98777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.03E-9	65	125	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.2E-11	75	123	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MSSSHQSEAG SEAKRVLKDL NQSMQFDLAV DDPSAQVENV LPMNSSMLPY HQATEEHRRQ 60 DLELFWIRQL SEISNATACE LFILELTLRA WLQTTDCKHR ALQRCDISRA TRQENMLDFL 120 NRVAPYEI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209041	2e-51	AC209041.1 Populus trichocarpa clone POP051-F04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024444106.1	1e-39	nuclear transcription factor Y subunit C-2
TrEMBL	A0A2K1X6V1	3e-38	A0A2K1X6V1_POPTR; Uncharacterized protein
STRING	POPTR_0005s15090.1	3e-29	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14399	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	6e-13	nuclear factor Y, subunit C2