PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG034246.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 99aa MW: 11534.8 Da PI: 10.7624

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG034246.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.1	3.6e-26	10	55	2	47
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +ienk+nr++tf+kR+ g+ KKA+ELS+LCd+e+aviifs+ gkl CCG034246.1 10 KIENKTNRHITFAKRKSGLVKKAHELSTLCDVEIAVIIFSPAGKLI 55 69******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.221	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.2E-32	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-28	2	85	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-23	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.7E-25	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.3E-23	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MGRVKLQLRK IENKTNRHIT FAKRKSGLVK KAHELSTLCD VEIAVIIFSP AGKLILFDAK 60 KRLEEILESY LNLPEKRRGR YKISFRVFNL ECVCFANKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_Q	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_R	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
1tqe_S	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6byy_A	2e-17	1	80	1	79	MEF2 CHIMERA
6byy_B	2e-17	1	80	1	79	MEF2 CHIMERA
6byy_C	2e-17	1	80	1	79	MEF2 CHIMERA
6byy_D	2e-17	1	80	1	79	MEF2 CHIMERA
6bz1_A	3e-17	1	80	1	79	MEF2 CHIMERA
6bz1_B	3e-17	1	80	1	79	MEF2 CHIMERA
6bz1_C	3e-17	1	80	1	79	MEF2 CHIMERA
6bz1_D	3e-17	1	80	1	79	MEF2 CHIMERA
6c9l_A	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_B	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_C	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_D	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_E	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
6c9l_F	3e-17	1	80	1	79	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380673.2	9e-46	MADS-box transcription factor 18
Swissprot	Q9LM46	4e-28	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A2K1ZPJ4	2e-51	A0A2K1ZPJ4_POPTR; Uncharacterized protein
STRING	Gorai.007G219600.1	3e-37	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	5e-31	AGAMOUS-like 67

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]