PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0016s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family M-type_MADS
Protein Properties Length: 336aa    MW: 38530.2 Da    PI: 6.2514
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0016s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.15.6e-141151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         ien   r++ + +R++g+ KK +EL +LC ++v++i+fs++
  Cagra.0016s0005.1.p 11 IENANARTICLKRRKEGLVKKLKELTILCSINVCMIMFSPN 51
                         9**************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.273151IPR002100Transcription factor, MADS-box
CDDcd002663.02E-23285No hitNo description
SuperFamilySSF554554.32E-20296IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-5323IPR002100Transcription factor, MADS-box
PfamPF003198.8E-151152IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTRKAIKLAW IENANARTIC LKRRKEGLVK KLKELTILCS INVCMIMFSP NEAEPMVWPS  60
AEKARGLLAD FNALSEVEKT KKQTSLESFM KEKIKKVHEQ IMKTRKKIIS YAIDHLMVKL  120
NRGGGIHDLN LSEIYELISF LRDNIILYRK MLGFAQYPLL QDPPVQPQFE EFTTTTTPND  180
VFVRSGQEDE KAWKKTDEAE KMISIGNAIK ENQSHYLIDQ WFFPSPQQPN PRIHQQIQMG  240
AMSYNNSISE TTNMEMEPVG TSMITFHGLF GSVSQPLQNH TVDDNAAVAI SDEPIQNPFN  300
FMSREELPPP NEEDNDDVTL FDMNKVWPHI NNNHM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0016s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020889440.11e-129MADS-box protein SVP-like
TrEMBLR0I8510.0R0I851_9BRAS; Uncharacterized protein
STRINGCagra.0016s0005.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47241446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.11e-77AGAMOUS-like 48