PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0027s0011.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

SRS

Protein Properties

Length: 213aa MW: 23603.1 Da PI: 6.9084

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0027s0011.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	181.7	3.1e-56	67	211	2	150
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsst 89 rs t+sCqdCGnqakk+C+h RCRtCCks+g+dC hv+stW+p+akrrerqq+ ++++s+ + a + +k re +++ ++l+s+ Cagra.0027s0011.1.p 67 RSLTISCQDCGNQAKKGCTHGRCRTCCKSHGLDCPIHVRSTWIPIAKRRERQQRIQTPTSDPITGAdrVGNIPKPYRE--TDQPATLDSS 154 57789**************************************************999988766323344444444..4666666666 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydq 150 l+++ +++Peev s+a+frcvr+s+ dd g ++aYqt+v i+GhvfkGiLy+q Cagra.0027s0011.1.p 155 GLEMGA-----RDATFPEEVISDALFRCVRMSGADDdGSCQYAYQTTVGIAGHVFKGILYNQ 211 666654.....4577**************9987899******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.8E-53	70	211	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-25	72	114	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-24	165	211	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MAGIGSSRNN EEDNQQKANW VWYRNTNNNN PSTSTSHHVH DNHIWQQPSL DLYPGQMDVC 60 DLTTSSRSLT ISCQDCGNQA KKGCTHGRCR TCCKSHGLDC PIHVRSTWIP IAKRRERQQR 120 IQTPTSDPIT GADRVGNIPK PYRETDQPAT LDSSGLEMGA RDATFPEEVI SDALFRCVRM 180 SGADDDGSCQ YAYQTTVGIA GHVFKGILYN QD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0027s0011.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296736.1	1e-160	protein SHI RELATED SEQUENCE 4
Swissprot	Q9SI19	1e-113	SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBL	R0HIX8	1e-159	R0HIX8_9BRAS; Uncharacterized protein
STRING	Cagra.0027s0011.1.p	1e-159	(Capsella grandiflora)
STRING	XP_006296736.1	1e-159	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15117	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18120.1	1e-111	SHI-related sequence 4

Link Out ? help Back to Top
Phytozome	Cagra.0027s0011.1.p