PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0038s0001.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 121aa MW: 13921.4 Da PI: 9.2518

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0038s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.5	2.1e-28	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C+ C +++++C+k+C +++yfp e + +++ ++ lFG+ n++k+++++pe+e+ ++++s++ e++a+++dPv+G +g++++l ++ + Cagra.0038s0001.1.p 9 PCCICITKNKNCPKNCEFSEYFPYELKDQYEGANNLFGTPNIIKTMRRAPEKEKLMLATSIIVEGNAWMKDPVRGGFGMVRNLMWKTVLH 98 7*************************************************************************************** PP DUF260 91 kaelallkee 100 ka l++l+e+ Cagra.0038s0001.1.p 99 KAYLHELEEK 108 **999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.977	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-22	9	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MEALRKNGPC CICITKNKNC PKNCEFSEYF PYELKDQYEG ANNLFGTPNI IKTMRRAPEK 60 EKLMLATSII VEGNAWMKDP VRGGFGMVRN LMWKTVLHKA YLHELEEKIK EGKKKTELHL 120 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0038s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006299784.2	2e-71	LOW QUALITY PROTEIN: LOB domain-containing protein 8
Swissprot	Q9ZUP0	3e-51	LBD8_ARATH; LOB domain-containing protein 8
TrEMBL	R0GAE3	5e-73	R0GAE3_9BRAS; Uncharacterized protein
STRING	Cagra.0038s0001.1.p	1e-84	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19510.1	2e-53	LOB domain-containing protein 8

Link Out ? help Back to Top
Phytozome	Cagra.0038s0001.1.p