PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0050s0122.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 767aa    MW: 83960.1 Da    PI: 6.4253
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0050s0122.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.5e-2195150156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe++F+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k
  Cagra.0050s0122.1.p  95 KKRYHRHTPQQIQELESVFKECPHPDEKQRLDLSRRLNLDSRQVKFWFQNRRTQMK 150
                          688999***********************************************999 PP
2START146.13.3e-462995131205
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela++a++elvk+a+ +ep+W  ss    e++n++e+ ++f++  +     + +ea++++g+v+ ++  lve+l+d+  +W e+++    
  Cagra.0050s0122.1.p 299 ELALTAMDELVKMAQTSEPLWIPSSkgkgEMLNREEYEKNFTPCLGpkpdgFVSEASKEVGMVIINSLALVETLMDSE-RWAEMFPcmia 387
                          5899*********************9***************88666999999**************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEE CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepk 157
                          + +t e issg      gal+lm+ae q+lsplvp R ++f+R+++q+ +g+w++vdvSvd  +++      + +  +++lpSg+l++++
  Cagra.0050s0122.1.p 388 RNSTSEIISSGmggtrnGALHLMQAEIQLLSPLVPvRQVTFLRFCKQHAEGVWAVVDVSVDRISDRGGsasAHTSLSCRRLPSGCLVQDM 477
                          *************************************************************988887666888899************** PP

                          CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          +ng+skvtw++h+++             +sgla+g k+w + lqrqce
  Cagra.0050s0122.1.p 478 PNGYSKVTWIDHTEY------------FSSGLAFGSKRWISVLQRQCE 513
                          **************8............467888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2179152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-2183152IPR009057Homeodomain-like
PROSITE profilePS5007117.63792152IPR001356Homeobox domain
SMARTSM003893.2E-1993156IPR001356Homeobox domain
CDDcd000868.60E-1995152No hitNo description
PfamPF000461.3E-1895150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PROSITE profilePS5084836.512290517IPR002913START domain
SuperFamilySSF559616.73E-26293514No hitNo description
CDDcd088752.79E-105294513No hitNo description
PfamPF018521.3E-38299512IPR002913START domain
SMARTSM002344.6E-35299514IPR002913START domain
SuperFamilySSF559613.57E-20542758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MNFSGFLHHD DDSSSGGGNH FSSAAMPGGL VKSIFSSPRL SLGLQQTNGE ATRTGESFEV  60
SVSRRSPESR SGSDNADALS GDDDLDASDR PLKKKKRYHR HTPQQIQELE SVFKECPHPD  120
EKQRLDLSRR LNLDSRQVKF WFQNRRTQMK TQIERHENSL LRQENDKLRA ENMSAREAIR  180
NPMCGHCGGA AVLGEISLEE HHLRIENSRL KDELDRICAL AGKFINRSDD DPTGSHHLLP  240
NSALQLGVGT KNGYGGGGFT LVPPAGFEIS SPFFSGLAAP VNRTTDVGTG LDQKSLYLEL  300
ALTAMDELVK MAQTSEPLWI PSSKGKGEML NREEYEKNFT PCLGPKPDGF VSEASKEVGM  360
VIINSLALVE TLMDSERWAE MFPCMIARNS TSEIISSGMG GTRNGALHLM QAEIQLLSPL  420
VPVRQVTFLR FCKQHAEGVW AVVDVSVDRI SDRGGSASAH TSLSCRRLPS GCLVQDMPNG  480
YSKVTWIDHT EYFSSGLAFG SKRWISVLQR QCESLTILMS STIPNRDNTT PISSIGKKSM  540
LKLAQRMTQK FCRGVCASSS QKWSKLEMGD IDEDVRIMTR KNVDDSGEPP GILLSAATSV  600
WVPVPPRQLF DFLRDELLRS EWDILSNGGP MQEIANIFKG QDQSNSVSLL RSTAMNANQS  660
SMLILQETSI DASGAVVVYA PVDIPAMHSV MKGADSAHVA LLPSGFGILP DDGQGMDETG  720
SLLTVAFQIL VNSLPTAKLN VESIETVNNL ISCTVQKIRA ALRCDK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0050s0122.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023640300.10.0homeobox-leucine zipper protein HDG1 isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLR0FVJ90.0R0FVJ9_9BRAS; Uncharacterized protein
STRINGCagra.0050s0122.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]