PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0053s0009.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

CAMTA

Protein Properties

Length: 920aa MW: 104340 Da PI: 7.6107

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0053s0009.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.5	7.7e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++n Cagra.0053s0009.2.p 30 DEaYTRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGNDN 119 45589*********************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ptf rrcywlL++++e+ivlvhy+e++ Cagra.0053s0009.2.p 120 PTFVRRCYWLLDKSQEHIVLVHYRETH 146 **********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.405	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.1E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.3E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.2E-13	370	456	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.46E-13	556	666	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.5E-15	557	669	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	9.6E-7	557	636	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.02E-15	565	676	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.292	574	669	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.7E-6	607	636	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.808	607	639	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.595	756	782	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	771	793	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.5E-4	794	816	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.237	795	819	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.2E-4	797	816	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.8	870	892	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	871	900	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.22	872	892	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MAGVDSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDHLSPK LVAEDINSVV 180 RNTCNTVRSN SLGARNHEIR LHEINTLDWD ELLVPADISN QSHPTEEDML YFTEQLETAP 240 RGSAKQGNHL AGYNGSVDIP SFPGLEDPVY QNNNSCGAGE FSSQHVHCGV ESILQRRNSN 300 ATVADQPGDA LLNNGYGSQD SFGRWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSTTAVSHS 360 HSNAPEQVFN ITDVSPAWAY STEKTKILVT GFFHDSFQHF GRSNLFCICG ELRVPAEFLQ 420 LGVYRCFLPP QSPGVVNLYL SVDGNKPVSQ LFSFEHRSVP VIEKAIPQDD QLHKWEEFEF 480 QVRLAHLLFT SSNKISVLTS KISPDNLLEA KKLASRTSHL LNSWAYLMKS IQANEVPFDQ 540 ARDHLFELTL KNRLKEWLLE KVIENRNTKE YDSKGLGVIH LCAVLGYTWS ILLFSWANIS 600 LDFRDKHGWT ALHWAAYYGR EKMVAALLSA GARPNLVTDP TKEFLGGCTP ADLAQQKGYD 660 GLAAFLAEKC LVAQFKDMQV AGNISGNLET IKAEQSSNPG NANEEEQSLK DTLAAYRTAA 720 EAAARIQGAF REHELKVRSS AVRFASKEEE AKNIIAAMKI QHAFRNFETR RKIAAAARIQ 780 YRFQTWKMRR EFLNMRNKAI RIQAAFRGYQ VRRQYQKITW SVGVLEKAIL RWRLKRKGFR 840 GLQVSQPEKK EGDEEVEDFY KTSQKQAEDR LERSVVKVQA MFRSKKAQQD YRRMKLAHEE 900 AQLEYDGMQE LDQMAMEES*

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MAGVDSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDHLSPK LVAEDINSVV  180
RNTCNTVRSN SLGARNHEIR LHEINTLDWD ELLVPADISN QSHPTEEDML YFTEQLETAP  240
RGSAKQGNHL AGYNGSVDIP SFPGLEDPVY QNNNSCGAGE FSSQHVHCGV ESILQRRNSN  300
ATVADQPGDA LLNNGYGSQD SFGRWVNNFI SDSPGSVDDP SLEAVYTPGQ ESSTTAVSHS  360
HSNAPEQVFN ITDVSPAWAY STEKTKILVT GFFHDSFQHF GRSNLFCICG ELRVPAEFLQ  420
LGVYRCFLPP QSPGVVNLYL SVDGNKPVSQ LFSFEHRSVP VIEKAIPQDD QLHKWEEFEF  480
QVRLAHLLFT SSNKISVLTS KISPDNLLEA KKLASRTSHL LNSWAYLMKS IQANEVPFDQ  540
ARDHLFELTL KNRLKEWLLE KVIENRNTKE YDSKGLGVIH LCAVLGYTWS ILLFSWANIS  600
LDFRDKHGWT ALHWAAYYGR EKMVAALLSA GARPNLVTDP TKEFLGGCTP ADLAQQKGYD  660
GLAAFLAEKC LVAQFKDMQV AGNISGNLET IKAEQSSNPG NANEEEQSLK DTLAAYRTAA  720
EAAARIQGAF REHELKVRSS AVRFASKEEE AKNIIAAMKI QHAFRNFETR RKIAAAARIQ  780
YRFQTWKMRR EFLNMRNKAI RIQAAFRGYQ VRRQYQKITW SVGVLEKAIL RWRLKRKGFR  840
GLQVSQPEKK EGDEEVEDFY KTSQKQAEDR LERSVVKVQA MFRSKKAQQD YRRMKLAHEE  900
AQLEYDGMQE LDQMAMEES*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0053s0009.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023635492.1	0.0	calmodulin-binding transcription activator 5 isoform X3
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	R0GWD2	0.0	R0GWD2_9BRAS; Uncharacterized protein
STRING	Cagra.0053s0009.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Cagra.0053s0009.2.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]