PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0062s0038.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 196aa    MW: 21755.3 Da    PI: 7.5375
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0062s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.8e-33113171159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dp+vv++tYeg Hnh+
  Cagra.0062s0038.1.p 113 LDDGYRWRKYGQKSVKNNAHPRSYYRCTYHTCNVKKQVQRLAKDPSVVVTTYEGVHNHP 171
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.6E-33100171IPR003657WRKY domain
SuperFamilySSF1182901.22E-28105172IPR003657WRKY domain
PROSITE profilePS5081129.126108173IPR003657WRKY domain
SMARTSM007741.4E-38113172IPR003657WRKY domain
PfamPF031061.7E-26114171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEGVDNTNPM LTLEEGENNN NPFSSFDDKT LMMMAPSLMF SGDVGPSSSS CSPASFHLSA  60
QPENFQGGGG DVGGLVSNND SDHINKNCNK GKGKRSQAMQ RIAFHTRSDD DVLDDGYRWR  120
KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPSVV VTTYEGVHNH PCEKLMETLS  180
PLLRQLQFLS RVSDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26103170774Probable WRKY transcription factor 4
2lex_A3e-26103170774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0062s0038.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0718480.0AY071848.1 Arabidopsis thaliana WRKY transcription factor 56 (WRKY56) mRNA, complete cds.
GenBankBT0248350.0BT024835.1 Arabidopsis thaliana At1g64000 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301676.11e-124probable WRKY transcription factor 56 isoform X1
SwissprotQ8VWQ41e-118WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLR0HXN21e-122R0HXN2_9BRAS; Uncharacterized protein
STRINGCagra.0062s0038.1.p1e-146(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.11e-110WRKY DNA-binding protein 56