PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0086s0001.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 318aa    MW: 35590.9 Da    PI: 6.4541
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0086s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.95.4e-25117179259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT..EEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk..vveitYegeHnhe 59 
                          +Dg++WrKYGqK++ g++fpr+YYrCt++   gC+++k+v+rs+e+++  ++e+ Y+g H ++
  Cagra.0086s0001.1.p 117 EDGFSWRKYGQKDILGARFPRGYYRCTYRksqGCEATKHVQRSDENQNqmLFEVSYRGIHSCS 179
                          8***************************98889*********9876542279********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-24114180IPR003657WRKY domain
PROSITE profilePS5081119.749116179IPR003657WRKY domain
SuperFamilySSF1182901.96E-21116180IPR003657WRKY domain
SMARTSM007747.3E-36116180IPR003657WRKY domain
PfamPF031063.2E-24117178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEKNSSSSGD WEKMKKEINE LMTQGRDYAH QFGSASSQET REHLANKILE SYHKSLTIMN  60
YSGDQDSPHA QGGGGGSPKS DDSDQEPLVI KKSKKSMPKW TRKVIIAPGV GIDRSLEDGF  120
SWRKYGQKDI LGARFPRGYY RCTYRKSQGC EATKHVQRSD ENQNQMLFEV SYRGIHSCSQ  180
AANVGSTVPV QNLEPNQTEN QENLDDIVKG SLESYNHDQE HFHHTLHYPL SSTPTLESNN  240
AFMLQPRDHN MDFFGSTSFS NDLGTNINYN FPASGSASHS TSNSPSTIPL ESPFERYDPN  300
HPYDPNHPYG GFGGFYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-18101166566Disease resistance protein RRS1
5w3x_D1e-18101166566Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0086s0001.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006288314.20.0probable WRKY transcription factor 30
SwissprotQ9FL621e-171WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLR0FG170.0R0FG17_9BRAS; Uncharacterized protein
STRINGCagra.0086s0001.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.11e-169WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]