PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0094s0002.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 304aa    MW: 32784.9 Da    PI: 7.5064
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0094s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1195.8e-3759138280
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaessss 80 
                          ++ k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++++a ++  +++ + 
  Cagra.0094s0002.1.p  59 PATKRPTKDRHTKVEGRGRRIRMPAGCAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTIPAIAVsVNGTLKI 138
                          5789************************************************************9999955532222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.69865119IPR017887Transcription factor TCP subgroup
PfamPF036347.5E-3065144IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESNQEGKAI REIDGNVDQV TMTNLFDPDP KPNPGFLMKK EEVGFLQPQM MTTTSSLKPA  60
TKRPTKDRHT KVEGRGRRIR MPAGCAARIF QLTRELGHKS DGETIRWLLE RAEPAIIEAT  120
GTGTIPAIAV SVNGTLKIPT TSPNDRGADG DGDGDLMKKR RKRNCTSDFV DVNEHESCHS  180
SVTSGLAPIT PSNYGVNIMN VNTQGLVPFW PMGMGTAFVT NGPNQMGQMW AIPTVATAPF  240
LNVGTRPVSS YVSNAEPQME TSGDGGATQP LRDFSLEVYD KKELQFLGGS GNSSPSSSCH  300
NKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157161KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00007PBMTransfer from 495258Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0094s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256230.0AB025623.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJM18.
GenBankAC2373300.0AC237330.1 Arabidopsis lyrata clone JGIFAFI-57C3, complete sequence.
GenBankAK1185790.0AK118579.1 Arabidopsis thaliana At5g51910 mRNA for unknown protein, complete cds, clone: RAFL19-81-E01.
GenBankBT0087790.0BT008779.1 Arabidopsis thaliana At5g51910 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280812.20.0transcription factor TCP19
RefseqXP_006280813.10.0transcription factor TCP19
SwissprotQ9LT891e-154TCP19_ARATH; Transcription factor TCP19
TrEMBLR0EXS10.0R0EXS1_9BRAS; Uncharacterized protein
TrEMBLR0GMZ10.0R0GMZ1_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0094s0002.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125832530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-150TCP family protein