PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0114s0053.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 315aa    MW: 35715.1 Da    PI: 6.5157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0114s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.92.4e-15117168155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Cagra.0114s0053.1.p 117 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 168
                          79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.99E-13115172No hitNo description
PROSITE profilePS5088816.196116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17116180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14116170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-12117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MPLEAIVYPQ DPFGYLSNCK DFMMFHDCLY PQEEVVAQDT KHNIDKSGQE QSFHVEQQGK  60
EEDRQWREYH QYPLLIPSLE EELGLPANDV ENHPPLQQRR KRRRTRNSKN KEEIENQRMT  120
HIAVERNRRK QMNEYLAVLR SLMPSSYAQR GDQASIVGGA INYVKELEHI LQSMGTKRTT  180
TTSTTHDVEG ATTSTSSLVS PFSDFFSFPQ FSTKSSEVPA PAESSSSSAE IEVTVAETHA  240
NIKIMAKKKP RQLIKLVASL QSLKLTLLHL NVTTHHNSIL YSISVKVEEG SQLNTVDDIA  300
TALNQTIMRI QEES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197103QRRKRRR
299103RKRRR
399104RKRRRT
4117128RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0114s0053.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304982.10.0transcription factor bHLH94
SwissprotQ9SK911e-171BH094_ARATH; Transcription factor bHLH94
TrEMBLR0IHJ20.0R0IHJ2_9BRAS; Uncharacterized protein
STRINGCagra.0114s0053.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-129bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]