PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0120s0003.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 534aa    MW: 60455.6 Da    PI: 10.1654
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0120s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.3e-1323951294
                         HTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3 12 ksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                         +++ + +p  f +++  g +  e+ t  l++  s  +W +k+  ++++    l+kGW++F++a++L++gD++vF+++g+     ++
  Cagra.0120s0003.1.p 23 NTS-ILIPEAFYSNYlkGRQ--EGNTAELRSdMSEMTWIIKM--DGRR----LSKGWEKFADAHNLQVGDILVFRHEGNL----LF 95
                         444.899*****99984434..5558888875888*******..9998....***********************76643....33 PP
2B3451.9e-14149238697
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++ +++ ++lp+ f+++ g++k + k+++l+de+gr  ++kl+y+ + +r+  ++GW+ F+  ng ++g f+ + l++ +++++v++
  Cagra.0120s0003.1.p 149 VTASNQRLDSVCLPRGFTNSSGLSKLC-KEMILMDEKGRPSKLKLCYKESTNRFCASRGWRAFCCKNGHQTGCFLRLILVR-NGKTPVLR 236
                          5788889999********999999865.7**********************************************999998.67778998 PP

                          EE CS
                   B3  96 vf 97 
                          vf
  Cagra.0120s0003.1.p 237 VF 238
                          87 PP
3B3421.7e-13300389697
                          ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                          +++++ +++ + lpk  +++ g++k + k+++++de+gr+  ++l+y+k+s+r+  ++GW+ F+  ng + g f+ + l++ +++++ ++
  Cagra.0120s0003.1.p 300 VTASNQRHDSFNLPKGLTTSSGLSKLC-KEIVFMDERGRTSILNLSYDKSSCRFKVRRGWRAFCCRNGHEIGCFLKLILVR-NGKTPILR 387
                          5788999999***********999865.7**********************************************999988.66668888 PP

                          EE CS
                   B3  96 vf 97 
                          +f
  Cagra.0120s0003.1.p 388 IF 389
                          77 PP
4B3581.7e-18428514390
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                           v ++ ++l+++rl+lp +  +++ +k  +  ++ l++++gr+W++ l+y+k+s+++ +++GWk F++ang k g +++Fkl++++++
  Cagra.0120s0003.1.p 428 VVSVTVSNLREDRLYLPVRLSRSNILK-GKFHEINLMNKHGRTWTLSLKYSKCSRKFSISRGWKCFCEANGQKPGCTFLFKLVRNRKA 514
                          66789999****************444.44569*************************************************987554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-198104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-189110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.02611103IPR003340B3 DNA binding domain
CDDcd100171.12E-1312100No hitNo description
SMARTSM010192.6E-1714103IPR003340B3 DNA binding domain
PfamPF023624.6E-92494IPR003340B3 DNA binding domain
PROSITE profilePS508639.192144241IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-13145235IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-15145241IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-12145236IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-12145239No hitNo description
PfamPF023624.9E-13149238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-12290386IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-12294386IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-10295390No hitNo description
PROSITE profilePS508638.6295392IPR003340B3 DNA binding domain
SMARTSM010197.0E-16296392IPR003340B3 DNA binding domain
PfamPF023622.5E-12300389IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-20419518IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-18422517IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-14426510No hitNo description
PROSITE profilePS5086313.366426522IPR003340B3 DNA binding domain
SMARTSM010196.9E-23427523IPR003340B3 DNA binding domain
PfamPF023622.5E-17427514IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MADSVLFSSA KPHFFKPILP GFNTSILIPE AFYSNYLKGR QEGNTAELRS DMSEMTWIIK  60
MDGRRLSKGW EKFADAHNLQ VGDILVFRHE GNLLFHVTPF GQSSCEIRYS YSSQKHNKEV  120
KDKTGKVTTV KKTAKNECSS VDIDFVVPVT ASNQRLDSVC LPRGFTNSSG LSKLCKEMIL  180
MDEKGRPSKL KLCYKESTNR FCASRGWRAF CCKNGHQTGC FLRLILVRNG KTPVLRVFPL  240
ERDEDNIGKH SKKINQEVEH ESVKEEIKED SGKLIRDRLV KKDTKSPCSS SHDTSFVVPV  300
TASNQRHDSF NLPKGLTTSS GLSKLCKEIV FMDERGRTSI LNLSYDKSSC RFKVRRGWRA  360
FCCRNGHEIG CFLKLILVRN GKTPILRIFP LEKDEGSIGK NSQNIKQEVE HESAKAESMS  420
LSDNSCFVVS VTVSNLREDR LYLPVRLSRS NILKGKFHEI NLMNKHGRTW TLSLKYSKCS  480
RKFSISRGWK CFCEANGQKP GCTFLFKLVR NRKAPVLLMT SLDGNTHQSK TGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0120s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283509.20.0B3 domain-containing protein REM-like 3
SwissprotF4KFT60.0REML3_ARATH; B3 domain-containing protein REM-like 3
TrEMBLR0F3W10.0R0F3W1_9BRAS; Uncharacterized protein
STRINGCagra.0120s0003.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17423910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G32460.10.0B3 family protein