PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0133s0077.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 462aa    MW: 50530.2 Da    PI: 6.9612
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0133s0077.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09272319455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cagra.0133s0077.1.p 272 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 319
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-17266337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-10266323No hitNo description
Gene3DG3DSA:4.10.280.107.7E-17268336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6272319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MENELFMNAG VSHAPVMTTS PSSSSAMLNW VSTQPIDPSL SRNLSPDCLF WEKSTEQSIF  60
DSALSSLVSS PTPSNSNFSG GGGENFIIRE LIGKLGDIYG TPASNGNVSG SCYATPMSSP  120
PPRHMMTVAK PPTPLAEFSG DSGFAERAAR FSCFGSRSFN GRTNSPFPIN NAPVATNEKL  180
PRISSTPALK PLASQVPAGE SSGEISRKRK TKSKQNSPST ASPTKEAEEE KEDSDRKRSK  240
KTEENEDKTK SSVDPYKDYI HVRARRGQAT DSHSLAERVR REKISERMKL LQDLVPGCNK  300
VTGKALMLDE IINYVQSLQR QVEFLSMKLS SVNTRLDFNM DAFMSKDIFP SSNNNVMHQQ  360
QVVLQLDSSA ETLLGDHHIT NLNPRVSSNN NLSETSETRS FISHLPTTLA HFTDSTSQYS  420
TFSEDDLHSI IHMGFAAHQN RISESNQGPS NQVPSNTKAE L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210SRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0133s0077.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297628.10.0transcription factor bHLH62
SwissprotQ9SRT20.0BH062_ARATH; Transcription factor bHLH62
TrEMBLR0G5870.0R0G587_9BRAS; Uncharacterized protein
STRINGCagra.0133s0077.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]