PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0154s0024.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 154aa MW: 17824.3 Da PI: 5.0869

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0154s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.6	9.1e-18	6	57	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +eql Le F+++ +++e++ +L+++lgL+ rqV vWFqNrRa++k Cagra.0154s0024.1.p 6 KRLASEQLASLELRFQEDFRLDTERKFKLSEELGLEPRQVAVWFQNRRARWK 57 56889**********************************************9 PP
2	HD-ZIP_I/II	108.3	5.4e-35	3	91	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k +rl++eq+++LE F+e+ +L++erK +l++eLgl+prqvavWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++ev++Lr+ Cagra.0154s0024.1.p 3 RKNKRLASEQLASLELRFQEDFRLDTERKFKLSEELGLEPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDAVWREKQMLHDEVTRLRA 91 589************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.374	1	59	IPR001356	Homeobox domain
SMART	SM00389	6.0E-15	2	63	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-17	3	70	IPR009057	Homeodomain-like
CDD	cd00086	6.50E-14	3	60	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-17	4	67	IPR009057	Homeodomain-like
Pfam	PF00046	4.0E-15	5	57	IPR001356	Homeobox domain
PRINTS	PR00031	4.8E-5	30	39	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	34	57	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.8E-5	39	55	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.6E-7	61	91	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MIRKNKRLAS EQLASLELRF QEDFRLDTER KFKLSEELGL EPRQVAVWFQ NRRARWKVKH 60 LEESYDSLRQ EYDAVWREKQ MLHDEVTRLR AIILRDQGLM MNNSQIAGGE NTDNGIGEYN 120 SPMMVDFSLL ASTALPVVTC CCSDLAEIES LVL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0154s0024.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006289347.2	1e-103	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-46	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	D7LWT8	1e-68	D7LWT8_ARALL; Predicted protein
STRING	Cagra.0154s0024.1.p	1e-110	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-49	homeobox 51

Link Out ? help Back to Top
Phytozome	Cagra.0154s0024.1.p

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]