PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0196s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 482aa    MW: 53453.3 Da    PI: 4.8861
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0196s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.71e-1031024741373
                 GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                          lv+lL+++Aea +  +++  l++ +Larl++l+sp + ++m+Rlaa+ft++L++ l r  +++ +  + +++  ++++++++a+++++++
  Cagra.0196s0006.1.p 102 LVHLLVAAAEASTGVNKSreLTRVILARLKDLVSPGDsTNMERLAAHFTNGLSKLLER--DNVLRPNQHRDD-VYDQADVISAFEMLQNM 188
                          689********9985544349**************9989*******************..666654444444.366************** PP

                 GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                          sP+++f++lt+ qaIle+v+ e+r+Hi+D+di +G+QW++L+qaL sR+   ++ +lRiT+++++++g  s  +++e g+rL+ fAe++g
  Cagra.0196s0006.1.p 189 SPYVNFGYLTTTQAILESVKYERRIHIVDYDIAEGVQWASLMQALLSRNtgTSAQHLRITALSRATNGkkSVASVQEAGRRLTAFAESIG 278
                          *************************************************655577*********999999999***************** PP

                 GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleale 262
                           pf+f+     + +++++++L++ +gEa+++n++l+l r+ +++ ++     ++L   k+l+Pk+v++v++e+ + +++ Fl+rf++ l+
  Cagra.0196s0006.1.p 279 QPFSFHH-CKLENDAFNTSSLKLVRGEAMVINCMLHLPRFSHQTPNSVI---SFLLEAKTLNPKLVTLVHEEVGLmGNQGFLNRFMDLLH 364
                          ******9.67799***************************988888777...9*********************99************** PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                           +sa+fdslea+l+ ++ +r +vEr+++g+++ n++   +a+   + e++++W ++le+ GF+p+++s  + +qaklll+ ++ dgyrve
  Cagra.0196s0006.1.p 365 QFSAIFDSLEAGLSITNPARGFVERVFIGPWVANWLKRITAD-DTEVESFASWPQWLETNGFEPMEVSFANRCQAKLLLSLFN-DGYRVE 452
                          *****************************************9.88999***********************************.****** PP

                 GRAS 353 ee.sgslvlgWkdrpLvsvSaW 373
                          e  ++ lvlgWk+r+Lvs+S+W
  Cagra.0196s0006.1.p 453 ELgHNGLVLGWKSRRLVSASFW 474
                          98688999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.1676455IPR005202Transcription factor GRAS
PfamPF035143.6E-101102474IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.40.801.1E-4132213No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDYPYEDFLD LFFSTNTNST AAAASTSSCG YSLNDIDIDW DCDFRDVIES IMGDEGVMTE  60
SESSPMLLGQ EGLCNSASTG LSVADGVSVE EPKIDESKGL RLVHLLVAAA EASTGVNKSR  120
ELTRVILARL KDLVSPGDST NMERLAAHFT NGLSKLLERD NVLRPNQHRD DVYDQADVIS  180
AFEMLQNMSP YVNFGYLTTT QAILESVKYE RRIHIVDYDI AEGVQWASLM QALLSRNTGT  240
SAQHLRITAL SRATNGKKSV ASVQEAGRRL TAFAESIGQP FSFHHCKLEN DAFNTSSLKL  300
VRGEAMVINC MLHLPRFSHQ TPNSVISFLL EAKTLNPKLV TLVHEEVGLM GNQGFLNRFM  360
DLLHQFSAIF DSLEAGLSIT NPARGFVERV FIGPWVANWL KRITADDTEV ESFASWPQWL  420
ETNGFEPMEV SFANRCQAKL LLSLFNDGYR VEELGHNGLV LGWKSRRLVS ASFWASHDSN  480
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4413747437374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0196s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006290057.10.0scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLR0HD470.0R0HD47_9BRAS; Uncharacterized protein
STRINGCagra.0196s0006.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein