PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0202s0047.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 262aa MW: 29613.6 Da PI: 9.7625

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0202s0047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.7e-31	53	106	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+av++LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+ Cagra.0202s0047.1.p 53 PRLRWTPDLHLSFVRAVQRLGGPHRATPKLVLQMMNLKGLSIAHVKSHLQMYRS 106 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-28	49	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.821	49	109	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.9E-22	53	108	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.53E-14	53	107	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-9	54	105	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MAGTSSAGKC YTWLDLNREE TVEKNNEEES SVEDEDQVTS SNNVRQYVRS NMPRLRWTPD 60 LHLSFVRAVQ RLGGPHRATP KLVLQMMNLK GLSIAHVKSH LQMYRSKKLE LSSRHEIGAF 120 MSGQRNYLMD MIDSGCNPYG GDLKHVYNSK TVPSRVPNLE GNFLMRPSSW LSGLCKNNRD 180 SIENKTLPLL EIRKTINEKR VREEEVSSVK RLKSISGQLP EFGNCRQKPA DDINTMLSLS 240 LFSTSSPGRD RNIASSNIVE R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-17	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-17	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-17	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-17	54	108	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-17	54	108	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0202s0047.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074640	1e-156	AY074640.1 Arabidopsis thaliana F14N22.7/F14N22.7 mRNA, complete cds.
GenBank	AY078938	1e-156	AY078938.1 Arabidopsis thaliana At2g45350/F14N22.7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295407.1	0.0	putative Myb family transcription factor At1g14600
TrEMBL	R0HSF6	0.0	R0HSF6_9BRAS; Uncharacterized protein
STRING	Cagra.0202s0047.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	1e-113	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cagra.0202s0047.1.p