PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0228s0052.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 183aa MW: 21310.2 Da PI: 9.628

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0228s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.1e-19	73	128	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +k+ ++t+eql+ Le+ F+++ +++ +++ +L+k+lgL+ rqV vWFqNr+a++k+ Cagra.0228s0052.1.p 73 KKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLSKELGLQPRQVAVWFQNRKARWKN 128 78999*************************************************95 PP
2	HD-ZIP_I/II	112.6	2.6e-36	73	164	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+++++eq+k+LE+sF+ee kL+p+rK++l++eLglqprqvavWFqnr+AR+k+kqlE+ ye+L++++d +++e+e L++e +L++ Cagra.0228s0052.1.p 73 KKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLSKELGLQPRQVAVWFQNRKARWKNKQLEHLYESLRQEFDVVSREKELLQEELIQLKSM 162 59**************************************************************************************88 PP HD-ZIP_I/II 91 lk 92 ++ Cagra.0228s0052.1.p 163 IR 164 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-19	60	131	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.443	69	129	IPR001356	Homeobox domain
SMART	SM00389	2.6E-17	71	133	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-16	73	128	IPR001356	Homeobox domain
CDD	cd00086	7.61E-15	73	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.9E-20	79	129	IPR009057	Homeodomain-like
PRINTS	PR00031	5.9E-5	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.9E-5	109	125	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEYWSSSFID GASSSNFMIS PFYNFDHFPG NDDNRCLSSG TIVGAQQGML HVPLEMVENG 60 YGEESNNING QQKKKKKMTS EQLKFLERSF QEEIKLNPDR KMKLSKELGL QPRQVAVWFQ 120 NRKARWKNKQ LEHLYESLRQ EFDVVSREKE LLQEELIQLK SMIRENGSNK KMQTWGKPAA 180 RQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00049	PBM	Transfer from AT2G36610	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0228s0052.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056569	5e-99	DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006295077.1	1e-132	homeobox-leucine zipper protein ATHB-22
Swissprot	Q4PSR7	1e-107	ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBL	R0HRP8	1e-131	R0HRP8_9BRAS; Uncharacterized protein
STRING	Cagra.0228s0052.1.p	1e-133	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36610.1	6e-94	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Cagra.0228s0052.1.p

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]