PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0239s0041.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Protein Properties

Length: 278aa MW: 32182.5 Da PI: 6.5199

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0239s0041.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.9	1.8e-13	28	105	17	97
E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 17 vlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 lp f++++ + ++ ++++t+++ +sg++W+++++ ++ s++++l++GWk+ k+ +L e f+vF++dg++ f ++ v+ Cagra.0239s0041.1.p 28 NLP--FVSDMISGTPLPRKVTVRSvSSGNTWRMEMTTNRESDTVFLRDGWKKIFKDENLIEPVFLVFEFDGSRVF--HFCVY 105 443..77777444568999***9999****9*****************************9998877..66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.5E-11	13	107	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-14	13	107	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.644	14	108	IPR003340	B3 DNA binding domain
CDD	cd10017	2.46E-9	14	105	No hit	No description
SMART	SM01019	1.2E-9	14	108	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.0E-10	30	104	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.46E-6	187	263	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.0E-4	190	274	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MKTQGSNGDL SQKFFRVYIP NVTEDNMNLP FVSDMISGTP LPRKVTVRSV SSGNTWRMEM 60 TTNRESDTVF LRDGWKKIFK DENLIEPVFL VFEFDGSRVF HFCVYEHSSM CKRMRSHIEQ 120 EVIEVKSDEE CEDDDNDDVT VEDEESTKGS DEWPGRKERG GTSRKRDSHD KLLDEYLDDE 180 LNPSFPVDLT QPRLRIPSIL IKDYNLTFSN LVIVRDKIGK MKRRISVWKN RSVYLNGLSS 240 VIRRNHVKPG DKMLCELKMV DGYHGLVHEI KVHITKG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0239s0041.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006294773.1	0.0	B3 domain-containing protein REM22
Swissprot	Q9STF1	1e-127	REM22_ARATH; B3 domain-containing protein REM22
TrEMBL	R0FY44	0.0	R0FY44_9BRAS; Uncharacterized protein
STRING	Cagra.0239s0041.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16649	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46770.1	1e-118	B3 family protein

Link Out ? help Back to Top
Phytozome	Cagra.0239s0041.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]