PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0239s0069.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family GRAS
Protein Properties Length: 637aa    MW: 69653.2 Da    PI: 5.7317
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0239s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.57.4e-952666352374
                 GRAS   2 velLlecAeavss.gdle.....laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                          +e+L+++Ae + + g+++     laq +Larl+++ +s++++p+qR+a++++eAL + +++      ++ pp   +++n + ++aa++ f
  Cagra.0239s0069.1.p 266 IEQLFNAAELIGTtGNTNgdhtvLAQGILARLNHHlNSNHKSPFQRAASHIAEALLSLIHN------DSSPPPLITPENLILRIAAYRSF 349
                          678888888886543333444469*********99899999********************......88888888899************ PP

                 GRAS  85 sevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLas.....RpegppslRiTgvgspesg..skeeleetgerL 165
                          se+sP+l+f ++taNq Ile+ + +  +r+HiiDfd+++G+QW +L+q+Las     R++ + sl++T++++p s+  ++ el+ t+e+L
  Cagra.0239s0069.1.p 350 SETSPFLQFVNFTANQSILESCNDSgfDRIHIIDFDVGYGGQWSSLMQELASggggrRRNRASSLKLTVFAPPPSTvsDEFELRFTEENL 439
                          **********************99888************************744443557899*********9988899*********** PP

                 GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                          + fA e+++pfe ++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F
  Cagra.0239s0069.1.p 440 KTFAGEVKIPFEVELLSIELLLNPAYWPLSLRSseKEAIAVNLPINSVVP--------GYLPLILRFLKQISPNVVVCSDRGCDRNDAPF 521
                          ****************88888888999998887779*******9954433........35667*************************** PP

                 GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                           + +++al+y+++l++sl+a+   ++++++++Er++++++i++++++++++     e+ + Wr+ ++++GF+p++ls++a++qa++ll++
  Cagra.0239s0069.1.p 522 PNAVIHALQYHTTLLESLDAN---QNQDDSSIERFWVQPSIEKLLMKRHRW----IERSHPWRSLITQCGFSPASLSQTAEAQAECLLQR 604
                          *********************...89*************************....78888****************************** PP

                 GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           +++g++ve+++ slv++W++++Lv+vSaW+
  Cagra.0239s0069.1.p 605 NPVRGFHVEKRQSSLVMCWQRKELVTVSAWK 635
                          ******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.066240615IPR005202Transcription factor GRAS
PfamPF035142.6E-92266635IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MPLSFERFQG EGVFGLSSSS SFYPDSHKTW FNQDKSGFTE AKEEDDLGYV VSCLLPEPTS  60
VLDALRSPSP LASHSSTTTT LSSSHGGGTT VTATAVTACD DNKCSQMGLD DLDGVLSASS  120
PGQEQSILRL IMDPGSGFGV FDPGFGFGSA SGPAPLPVTE NSNPLCSFPF QEITNPAEAL  180
VNPTTSHCMF SNPPLSPPAK RFHSGSHHQP VFPFSDPDPG RQHQFQFPFQ FHHSQQQQIP  240
SSSSSAVAMV PVPPPGMAGD DQSVIIEQLF NAAELIGTTG NTNGDHTVLA QGILARLNHH  300
LNSNHKSPFQ RAASHIAEAL LSLIHNDSSP PPLITPENLI LRIAAYRSFS ETSPFLQFVN  360
FTANQSILES CNDSGFDRIH IIDFDVGYGG QWSSLMQELA SGGGGRRRNR ASSLKLTVFA  420
PPPSTVSDEF ELRFTEENLK TFAGEVKIPF EVELLSIELL LNPAYWPLSL RSSEKEAIAV  480
NLPINSVVPG YLPLILRFLK QISPNVVVCS DRGCDRNDAP FPNAVIHALQ YHTTLLESLD  540
ANQNQDDSSI ERFWVQPSIE KLLMKRHRWI ERSHPWRSLI TQCGFSPASL SQTAEAQAEC  600
LLQRNPVRGF HVEKRQSSLV MCWQRKELVT VSAWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-2930363534375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0239s0069.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546050.0AC254605.1 Capsella rubella clone CAP23-M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295629.10.0scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLR0FZJ90.0R0FZJ9_9BRAS; Uncharacterized protein
STRINGCagra.0239s0069.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  3. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]