PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0244s0009.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 136aa MW: 14473.7 Da PI: 7.7593

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0244s0009.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.3	3e-21	15	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd ++ g r++lg+f+taeeAa+a+++a+ +++g Cagra.0244s0009.1.p 15 KYRGVRRRP-WGKYAAEIRDSRKHG--ERIWLGTFDTAEEAARAYDQAAYSMRG 65 8******.******65443..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.5E-15	15	65	IPR001471	AP2/ERF domain
CDD	cd00018	1.62E-27	15	74	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.8E-32	15	75	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.96	15	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.3E-24	15	75	IPR016177	DNA-binding domain
SMART	SM00380	1.1E-35	15	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-12	16	27	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.3E-12	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009789	Biological Process	positive regulation of abscisic acid-activated signaling pathway
GO:0010186	Biological Process	positive regulation of cellular defense response
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0090332	Biological Process	stomatal closure
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MDQGGRGGGG AEHGKYRGVR RRPWGKYAAE IRDSRKHGER IWLGTFDTAE EAARAYDQAA 60 YSMRGQAAIL NFPHEYNMGS GGGGGGSSSS VVAGSSSSSA SSSSRQVFEF EYLDDSVLED 120 LLEQGENTTN KGKKK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-59	1	135	1	131	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	9	GGRGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00029	PBM	Transfer from AT5G43410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0244s0009.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006282000.1	6e-66	ethylene-responsive transcription factor ERF096
Swissprot	Q9LSX0	4e-59	ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBL	R0GUN6	1e-64	R0GUN6_9BRAS; Uncharacterized protein
STRING	Cagra.0244s0009.1.p	3e-93	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04370.1	8e-38	Ethylene-responsive element binding factor 14

Link Out ? help Back to Top
Phytozome	Cagra.0244s0009.1.p

Publications ? help Back to Top
Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234]