PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0248s0087.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 365aa    MW: 40186 Da    PI: 4.4235
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0248s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.46e-4561341129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtd elv +yLk+kv gkk+++ ++i+e+diyk+eP dLp + ++ +++ +wyfF++r+kky++g ++nr+t+ gyWk+tg+
  Cagra.0248s0087.1.p   6 LAPGFRFHPTDVELVRYYLKRKVLGKKFRV-NAIAEIDIYKFEPPDLPeRsCLGTGDLKWYFFCPREKKYPKGGKANRSTECGYWKTTGR 94 
                          579***************************.89**************95247777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          d++v   ++++vg  +tL+++ g+ p+g +tdWv+heyrle
  Cagra.0248s0087.1.p  95 DRDVSY-NDQVVGKIRTLIYHFGKIPRGDRTDWVIHEYRLE 134
                          *****9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-533156IPR003441NAC domain
PROSITE profilePS5100551.4476156IPR003441NAC domain
PfamPF023652.4E-248133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGKTNLAPGF RFHPTDVELV RYYLKRKVLG KKFRVNAIAE IDIYKFEPPD LPERSCLGTG  60
DLKWYFFCPR EKKYPKGGKA NRSTECGYWK TTGRDRDVSY NDQVVGKIRT LIYHFGKIPR  120
GDRTDWVIHE YRLEDQVLAQ KNVPQDSYVL CVLFKKSGLG PRHGSQYGAP FKDEDWSGEE  180
DEDTQNLVAV PSAVNAGPGP SKETSIVATA SQSTAPKDCL AGVISDSCVS DILPLTATVL  240
PPLTSDVAAH APMSSSPLPE VPQVPPDDDD ELNSMLDLFS VVNDECLLFD DFDCQNEVRH  300
ETGVFVNEEA PVFLGDGNFS GMFDLSNELV MELQDLIQPD TPPPPPPPPA QASNPDDSSS  360
NGQT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-44515714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0248s0087.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0118220.0BT011822.1 Arabidopsis thaliana At5g49950 mRNA sequence.
GenBankBT0155830.0BT015583.1 Arabidopsis thaliana At5g64060 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006280680.10.0NAC domain-containing protein 82 isoform X1
SwissprotQ9FY821e-129NAC82_ARATH; NAC domain-containing protein 82
TrEMBLR0GQY90.0R0GQY9_9BRAS; Uncharacterized protein
STRINGCagra.0248s0087.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-177NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]