PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0255s0018.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 229aa    MW: 25266.2 Da    PI: 7.9637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0255s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001683105123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C+ C+k Fs++  L  H++ H
  Cagra.0255s0018.1.p  83 FACTFCKKEFSTSQALGGHQNAH 105
                          78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-579109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.65E-680110No hitNo description
PfamPF139125.8E-682107IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.65583110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MELNLSTPTS CSSSSISSSS HHEIIPSTTK GRKMKEKVSA AEPSMETTPR LEFRFLFDES  60
IRNSGFGDEA QAGTRAEPKA RVFACTFCKK EFSTSQALGG HQNAHKQERS LAKRRKEIEV  120
NYPGLSSFYS NQYPPPSGVS YNGSSSQYDL GVRYNPNIAK TSKPYPFNIF RCRLGYRGLN  180
IPLLSHLSVP KSDDLSTNLI ANLEGSINED IKDDQPDTDS DIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0255s0018.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1623511e-108AL162351.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T20L15 (ESSA project).
GenBankCP0026881e-108CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279345.11e-166zinc finger protein 4
TrEMBLR0GM171e-165R0GM17_9BRAS; Uncharacterized protein
STRINGCagra.0255s0018.1.p1e-168(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87382636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.12e-86C2H2 family protein