PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0263s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ZF-HD
Protein Properties Length: 122aa    MW: 13385.3 Da    PI: 7.1303
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0263s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer28.14.7e-0917581759
          ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                         + g+  D C+ f++  geegt++a+ C  CgCH  FH ++v +
  Cagra.0263s0009.1.p 17 INGEPKDHCRHFLAG-GEEGTPEAFFCHGCGCHVCFHLKDVIK 58
                         667889********8.999******************998765 PP
2ZF-HD_dimer76.73.1e-2467119456
          ZF-HD_dimer   4 vrYkeClkNhAaslGgh.avDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                          ++Y +ClkNh a +Gg  ++DGCgEfm++ gee t++al CaACgCHR+FH ++
  Cagra.0263s0009.1.p  67 AQYGKCLKNHTAYMGGRcSLDGCGEFMAA-GEERTPEALSCAACGCHRSFHQKS 119
                          68**************7369********9.8999*****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.3E-81855IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-1268118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2268119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.8E-2268119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.63569119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MSKWREIVTY GMCVNRINGE PKDHCRHFLA GGEEGTPEAF FCHGCGCHVC FHLKDVIKEI  60
DMSTAIAQYG KCLKNHTAYM GGRCSLDGCG EFMAAGEERT PEALSCAACG CHRSFHQKSY  120
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0263s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010420655.11e-75PREDICTED: zinc-finger homeodomain protein 8-like
TrEMBLA0A1J3IS134e-55A0A1J3IS13_NOCCA; Mini zinc finger protein 1
STRINGCagra.0263s0009.1.p9e-86(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1748978
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-17homeobox protein 21