PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0268s0009.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HB-PHD
Protein Properties Length: 791aa    MW: 89202.7 Da    PI: 4.6084
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0268s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-10462506953
                          HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
             Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                          k  +e L  +F++n  ps++ r +L+k+l+L+ ++V+ WF+N R+
  Cagra.0268s0009.1.p 462 KAAVEKLRLVFAENELPSKAVRDRLSKELSLDPEKVSKWFKNSRY 506
                          667899*************************************97 PP
2PHD40.94.6e-14192247151
                          SBTTTSSTCT..TSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgksde..egelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C++ ++  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  Cagra.0268s0009.1.p 192 FCAECNSREAflDNDIILCDgTCNRAFHQKCLDPPLETENIPPGdqGWFCKVCDCK 247
                          6999***55556********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.53E-14184249IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.4E-12185248IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.941190247IPR019787Zinc finger, PHD-finger
SMARTSM002499.3E-10192245IPR001965Zinc finger, PHD-type
CDDcd155042.20E-30192244No hitNo description
PfamPF006283.6E-11192247IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590193244IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.608.1E-12440505IPR009057Homeodomain-like
SuperFamilySSF466893.72E-10449515IPR009057Homeodomain-like
PROSITE profilePS5007112.633451511IPR001356Homeobox domain
SMARTSM003891.5E-10453515IPR001356Homeobox domain
CDDcd000863.45E-8454506No hitNo description
PfamPF000467.9E-8462506IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MEESETKGRI TRETTEKACV SVQRIGSTLL SSLVKKGKET SNKRNPKPNK RKSEEELCSK  60
SRNKKCSRGW VHCEEKEEKG KKTRKRKSKR QQKDNTVEVD DSLRLQRRTR YLLIKMKMQQ  120
NLIDAYATEG WKGQSREKIR PDKELERARK QILNCKLGLR DAIRQLDLLS SVGSMEDKAI  180
APDGSIHHDH IFCAECNSRE AFLDNDIILC DGTCNRAFHQ KCLDPPLETE NIPPGDQGWF  240
CKVCDCKMEI IDTMNAQIGT HFPEDSNWQD IFKEEASLPI GSEAGLNNEA DWPSDDSKDD  300
DYDPEMRENG AGSSSNVSGG GVGDNDGESM STSVSLSSDG VALSTGSWEG NGFNNMMDQC  360
ETSNEETVCG PRQRRTVDYT KLYYEMFGKD AVMQEQGSED EDWGPNDRRR RKKESDVTSN  420
PVNMCESSKK DQVAIQIPEQ SERVSASVED KGGRRPMFRL PKAAVEKLRL VFAENELPSK  480
AVRDRLSKEL SLDPEKVSKW FKNSRYMALR NRRAESVKQP EHSKMVSGPE AVMETNTDTN  540
EAQNTLEETF PPGFNDFVTN QKTISPSNNN QEVPEDTKTV SGGDSGPEAV MENNIDANEV  600
QDTLDETVPP GFNDSATSQK ILSPCNNNQE EIQQANVSYP TLTVETQQYL EQNDSSFALV  660
PHEELSSEIS LNTAVKEKET ESKTNKEPQE ELRSEMSLKV AEEEEEETES KMTGEEEETE  720
SKMTEEEAFE AVMEMLCRTE NKLLDVTQRL ERFKTPKGRK RLGKSSSSLL EEDSVVYVPI  780
AEIMENNNNN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287TRKRKS
2408413RRRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0268s0009.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATHPRHA0.0L21991.1 Arabidopsis thaliana homeodomain protein (PRHA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283148.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLR0F3V50.0R0F3V5_9BRAS; Uncharacterized protein
STRINGCagra.0268s0009.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.20.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]