PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0277s0021.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 199aa    MW: 23103.7 Da    PI: 9.3647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0277s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.1e-142879255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         +++h e Er RR+++ + ++ Lr+llP  +   ++K s ++ + +Av+YIk+Lq
  Cagra.0277s0021.1.p 28 KMMHRETERLRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 79
                         789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9412678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-82883No hitNo description
PfamPF000106.1E-112879IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-102892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-142896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-63284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDDCREKRRR RCPKLTCSTD HNNNNMEKMM HRETERLRRQ EMATLYASLR SLLPLHFIKG  60
KRSTSDQVNE AVNYIKYLQR KTKELSLRRD ELMLLSRGSF LGCSSNDDSK EEMEMMSRKN  120
HVVVRQCLVG VEIVFSSRRC RGQPRFSSVL QVLSENGLCL LNSISSIVDD RLIYTIQAEV  180
NDMALIDLVA LENRLVRM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0277s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174301e-179AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109521e-179BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281135.11e-139transcription factor bHLH36
SwissprotQ9FLI11e-100BH036_ARATH; Transcription factor bHLH36
TrEMBLR0GSA51e-138R0GSA5_9BRAS; Uncharacterized protein
STRINGCagra.0277s0021.1.p1e-142(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-102bHLH family protein