PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0334s0014.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 496aa    MW: 54490 Da    PI: 6.3092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0334s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.7e-31243302159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Cagra.0334s0014.1.p 243 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDTTILTTTYEGNHNHP 302
                          58*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-33228304IPR003657WRKY domain
SuperFamilySSF1182908.11E-28236304IPR003657WRKY domain
PROSITE profilePS5081128.862238304IPR003657WRKY domain
SMARTSM007743.5E-37243303IPR003657WRKY domain
PfamPF031061.5E-26244302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDEHTQDPRE IAFLHSGEFP RGDFDSKDHQ PDESSEEHLH DESSSIKEVD FFSPKSHPYD  60
DISQVKTTII VGSSGFNDNL GMVNLCHGTS SDDGDDKTKT KTQIIRLKLE LERLHEENHK  120
LRHLLDEISQ SYNDLQRRVL LVRQTQVEGL HKQHEDTTQA GSSQALEDRR PKHMNNEISA  180
TTLKRLSPED EDHRDDMHQG SPKTPRLDQN KSANHEEQQN PHDQLPFRKA RVSVRARSDA  240
TTVNDGCQWR KYGQKMAKGN PCPRAYYRCT MAIGCPVRKQ VQRCAEDTTI LTTTYEGNHN  300
HPLPPSATAM AATTSAAAAM LLSGSSTSNI HQTLSSPSAA SSSSFYHNFP YTSTIATLSA  360
SAPFPTITLD LTNPPRPLQP PQQFLSQYGP AAFLPNANQI RSINNNNNNN NAQLLLPNLL  420
GPQAALPRDM VDSVRAAIAM DPNFTAALAA AISNIIGGGG NNDNNDINNN NKVDGASSNG  480
DSPQLPQSCT TFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22230305175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0334s0014.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287597.10.0probable WRKY transcription factor 47 isoform X1
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLR0H6P40.0R0H6P4_9BRAS; Uncharacterized protein
STRINGCagra.0334s0014.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein