PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0342s0030.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

LBD

Protein Properties

Length: 252aa MW: 27096.4 Da PI: 7.9374

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0342s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.3	8.9e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g+++++++ Cagra.0342s0030.1.p 2 SCNGCRVLRKGCSENCILRPCIqwiesADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNW 91 6*******************9998666778****************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ Cagra.0342s0030.1.p 92 NICQAAVETVLR 103 ****999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.553	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNICQAAVET VLRGGSLRPI PELLAHGGGF 120 AGFPSPTSEE ASEICTEMLN LQQNDSTDRN IYHHSRFSSS RSRSTMDSSS PPTKRKRVTS 180 SEQQPSSELD LSLIPKSTPS SSTRRRSLTP SMNSEDSVTT TTTASFCDKG DVYGNGNGGG 240 LETSKLLNLF V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0342s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473872	0.0	AB473872.1 Arabidopsis thaliana ASL39 mRNA for ASYMMETRIC LEAVES2-like 39 protein, complete cds.
GenBank	AF447894	0.0	AF447894.1 Arabidopsis thaliana LOB DOMAIN 37 (LBD37) mRNA, complete cds.
GenBank	BT024477	0.0	BT024477.1 Arabidopsis thaliana At5g67420 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281433.1	0.0	LOB domain-containing protein 37
Swissprot	Q9FN11	1e-148	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	R0EZD1	0.0	R0EZD1_9BRAS; Uncharacterized protein
STRING	Cagra.0342s0030.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-134	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Cagra.0342s0030.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]