PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0381s0006.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 169aa    MW: 18852.7 Da    PI: 10.8312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0381s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.7e-211564255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +++GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a+++a+++++g
  Cagra.0381s0006.1.p 15 HFRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDKAAREFRG 64
                         69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-391578IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-331572IPR001471AP2/ERF domain
CDDcd000181.86E-291572No hitNo description
SuperFamilySSF541719.81E-231573IPR016177DNA-binding domain
PfamPF008473.0E-141564IPR001471AP2/ERF domain
PROSITE profilePS5103223.7231572IPR001471AP2/ERF domain
PRINTSPR003672.2E-111627IPR001471AP2/ERF domain
PRINTSPR003672.2E-113854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAPKQVVNAV RKEVHFRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAEE AARAYDKAAR  60
EFRGSKAKTN FPLPGESAAA TTAREMTRQR FPFACHRERK VVGGYAAAGF CFDPSRAAAL  120
RAELSRVYPV RFDPVNIELS IGIREAVVKV EPRRELNLDL NLAPPVDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-221273264ATERF1
3gcc_A1e-221273264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0381s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0052392e-83AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1.
GenBankAB0476482e-83AB047648.1 Arabidopsis thaliana AtERF9 gene for ERF domain protein 9, complete cds.
GenBankAY5608562e-83AY560856.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g44210) mRNA, complete cds.
GenBankCP0026882e-83CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281207.11e-114ethylene-responsive transcription factor 9
SwissprotQ9FE677e-99ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLR0GP271e-113R0GP27_9BRAS; Uncharacterized protein
STRINGCagra.0381s0006.1.p1e-118(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-80erf domain protein 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]