PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0402s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 99aa    MW: 11309.8 Da    PI: 9.4934
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0402s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-071054244
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +WT    + + +a + + ++   +W+ +a+ +  g++ +++k+++
  Cagra.0402s0005.1.p 10 SSWTFHQNKMFERALAIYDKDtpdRWHNVAKAVE-GKSVEEVKHHY 54
                         57********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-6860IPR001005SANT/Myb domain
SuperFamilySSF466891.63E-121066IPR009057Homeodomain-like
CDDcd001671.93E-51254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASNSASSTS SWTFHQNKMF ERALAIYDKD TPDRWHNVAK AVEGKSVEEV KHHYDILVED  60
LINIESGRVP LPKYKTMESK PRGTNDFDTR VMKKNLKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30176175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0402s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3953465e-79DQ395346.1 Arabidopsis thaliana RAD-like protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303004.22e-58protein RADIALIS-like 6
SwissprotQ1A1731e-53RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLR0GJ424e-57R0GJ42_9BRAS; Uncharacterized protein (Fragment)
STRINGCagra.0402s0005.1.p5e-68(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-50RAD-like 6