PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0410s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family B3
Protein Properties Length: 233aa    MW: 26534.4 Da    PI: 6.5181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0410s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.5e-11121214280
                          EEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTH.HHHHHHHT- CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy.rkksgryvltkGW.keFvkangL 74 
                          +k+l++sdv+ + rl +pk+ a+eh               +g  +++ ++tl d+ ++s +  +   +++ g+yvl+++W k+Fv+++gL
  Cagra.0410s0005.1.p 121 KKTLSKSDVGIQTRLLIPKESANEHilkylteeeiklvedEG--NRGLKITLFDTANKSTNQLCLKrWNSAGSYVLKSNWnKDFVEEKGL 208
                          699**********************88777666666653322..25556666666655555444334*************557******* PP

                          -TT-EE CS
                   B3  75 kegDfv 80 
                          ++g  +
  Cagra.0410s0005.1.p 209 EAGKQI 214
                          **9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.86E-14116222IPR015300DNA-binding pseudobarrel domain
CDDcd100177.66E-16118231No hitNo description
Gene3DG3DSA:2.40.330.101.9E-14120220IPR015300DNA-binding pseudobarrel domain
PfamPF023622.6E-8122214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MLLFPCHVEE LAEMVPCGGR SEGEVMNTED YDSPSSFPKR PRLLDLFPCQ SVALDLFPCR  60
SVVLDLFPCQ SGDFARVVPS AARNERRVVS LAHFRNMPRE ERDNVSTELT LSIEGDIWKI  120
KKTLSKSDVG IQTRLLIPKE SANEHILKYL TEEEIKLVED EGNRGLKITL FDTANKSTNQ  180
LCLKRWNSAG SYVLKSNWNK DFVEEKGLEA GKQIELFWNP YASRLHFRVL KN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0410s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468027.11e-106PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLR0I8N31e-146R0I8N3_9BRAS; Uncharacterized protein
STRINGCagra.0410s0005.1.p1e-172(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-26B3 family protein