PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0430s0043.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 247aa    MW: 25611.7 Da    PI: 9.9971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0430s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.5e-073861225
                         -S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                         k ++C  f+ t  C++G++C+F H
  Cagra.0430s0043.1.p 38 KSKPCTKFFSTSGCPFGENCHFLH 61
                         7789******************** PP
2zf-CCCH36.86.4e-12212237127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ykt++C +f++ G C +GdrC+FaHg+
  Cagra.0430s0043.1.p 212 YKTKICERFSK-GNCTFGDRCHFAHGE 237
                          9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.843664IPR000571Zinc finger, CCCH-type
SMARTSM003560.213663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-63763IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-83861IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-53861IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.21E-1599180IPR004088K Homology domain, type 1
SMARTSM003221.8E-11109179IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.104.2E-16109178IPR004088K Homology domain, type 1
PROSITE profilePS5008414.55110174IPR004088K Homology domain, type 1
PfamPF000134.7E-12112176IPR004088K Homology domain, type 1
CDDcd001052.76E-13112174No hitNo description
Gene3DG3DSA:4.10.1000.102.3E-16206241IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-8211237IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-8211241IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.215211238IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-9212237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDVRKRGRPE AGSFNSNGGG FKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL  60
HYVPGGYNAV SQMTNMGPPM PQVSRNMGGG GRFSGRGESG PGHVSSFGAS ATAKISVDAS  120
LAGAIIGKGG VSSKQICRQT GAKLSIQDHE RDPNLKNIEL EGTFEQINEA SAMVRELIGR  180
LNSAAKKPPG GGGGGGGGGM GSEGKPHPGS NYKTKICERF SKGNCTFGDR CHFAHGEAEL  240
RRSGIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0430s0043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2273730.0AK227373.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-J23.
GenBankAY0857460.0AY085746.1 Arabidopsis thaliana clone 17632 mRNA, complete sequence.
GenBankBT0250320.0BT025032.1 Arabidopsis thaliana At3g12130 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006298416.11e-179zinc finger CCCH domain-containing protein 36 isoform X1
SwissprotQ9C7C31e-153C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLR0HNJ71e-177R0HNJ7_9BRAS; Uncharacterized protein
STRINGCagra.0430s0043.1.p1e-178(Capsella grandiflora)
STRINGXP_006298416.11e-178(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-132C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]