PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0456s0008.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WOX
Protein Properties Length: 354aa    MW: 40219.8 Da    PI: 7.1392
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0456s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.67.6e-2276135357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Cagra.0456s0008.1.p  76 SRWNPTPDQLRVLEELYRQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 135
                          7*****************99**************************************97 PP
2Wus_type_Homeobox117.94.6e-3875137365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++RW+Ptp+Q+++Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Cagra.0456s0008.1.p  75 SSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 137
                          79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.1E-573140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-976135IPR009057Homeodomain-like
PfamPF000461.5E-1976135IPR001356Homeobox domain
SuperFamilySSF466897.48E-1276141IPR009057Homeodomain-like
CDDcd000865.12E-677137No hitNo description
PROSITE profilePS5007110.86781136IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MWTMGYNEGG PDSFNGGRRL RPLIPRLSSC PTAAPNTNSD HRFNMAVMTM TAEQNKRELM  60
MLNSEPQHPP AVMVSSRWNP TPDQLRVLEE LYRQGTRTPS ADHIQQITAQ LRRYGKIEGK  120
NVFYWFQNHK ARERQKRRRQ METGQEESVL TTASLVSNHG FDKKDPPGYK VEQAKNWICS  180
VGCDTQLEKP CHNDDHEEEP ANIRVERNGR CGGDERRGFL GRNVTWQMMQ LPPGLYPSSH  240
HHQRNQLVLN STTVSPNVST SSFNTVSPAK DSVTLLPVFQ STRGATNAES CLRNCDDNKD  300
QEGHEECSNS ESDHQEQTLE LFPLRKEGFC SDAEKAKEIS GIHCFYEFLP LKN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0456s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023642285.10.0WUSCHEL-related homeobox 1 isoform X1
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLR0HYV80.0R0HYV8_9BRAS; Uncharacterized protein
STRINGCagra.0456s0008.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]