PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0463s0004.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

HD-ZIP

Protein Properties

Length: 200aa MW: 23023 Da PI: 6.7962

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0463s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.2e-18	60	114	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+ ++t+eql Le +F+++ ++++e++ +L+k+lgL+ rq vWFqNrRa++k Cagra.0463s0004.1.p 60 KKKKRLTSEQLASLEICFQEDIKLDTERKLKLSKELGLQPRQTAVWFQNRRARWK 114 57778*************************************************9 PP
2	HD-ZIP_I/II	111.7	4.8e-36	60	151	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq+++LE +F+e+ kL++erK +l++eLglqprq avWFqnrRAR+k k+lE+ y++L+++yd++ +e+++L++ev++Lr+ Cagra.0463s0004.1.p 60 KKKKRLTSEQLASLEICFQEDIKLDTERKLKLSKELGLQPRQTAVWFQNRRARWKVKHLEESYNSLRQEYDNVWREKQMLHDEVRKLRAI 149 59*************************************************************************************976 PP HD-ZIP_I/II 91 lk 92 ++ Cagra.0463s0004.1.p 150 IQ 151 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-18	44	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.18	56	116	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	58	120	IPR001356	Homeobox domain
CDD	cd00086	1.51E-15	60	117	No hit	No description
Pfam	PF00046	1.2E-15	60	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.3E-18	66	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MPSPGLESNG WLHSFSYDPY AGNSYTHAAM ETGPVITVPE SEMMINTYQC DPSNNDEMIK 60 KKKRLTSEQL ASLEICFQED IKLDTERKLK LSKELGLQPR QTAVWFQNRR ARWKVKHLEE 120 SYNSLRQEYD NVWREKQMLH DEVRKLRAII QRDQGLMMNN NQIAGGDHTN NGIGEYNSPM 180 MVGSSHVLWP GISQPPNPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0463s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM214233	1e-135	KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds.
GenBank	KM214234	1e-135	KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006289854.2	1e-116	putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	1e-75	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A077B3F2	1e-114	A0A077B3F2_9BRAS; RCO-A
STRING	Cagra.0463s0004.1.p	1e-149	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-78	homeobox 51

Link Out ? help Back to Top
Phytozome	Cagra.0463s0004.1.p

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]