PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0463s0005.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB_related
Protein Properties Length: 134aa    MW: 14921.8 Da    PI: 4.7046
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0463s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd ll +++ ++G g W++++ + g++R++k+c++rw +yl
  Cagra.0463s0005.1.p 10 KGAWTAEEDTLLRQCIDKYGEGKWNLVPLRAGLNRCRKSCRLRWVNYL 57
                         79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.779561IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-22560IPR009057Homeodomain-like
SMARTSM007172.0E-14959IPR001005SANT/Myb domain
PfamPF002491.8E-161057IPR001005SANT/Myb domain
SuperFamilySSF466894.39E-221184IPR009057Homeodomain-like
CDDcd001674.30E-111257No hitNo description
Gene3DG3DSA:1.10.10.607.9E-76184IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEGSSKALKK GAWTAEEDTL LRQCIDKYGE GKWNLVPLRA GLNRCRKSCR LRWVNYLNPN  60
INRGEFSSDE VDLLIRLHKL LGNRLLEESQ KADVAGNVGI TIDEEEDTSS IDSMSSTFEK  120
LGSLFNVDTG EVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-13887583B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0463s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444376.14e-47PREDICTED: transcription factor MYB114-like isoform X2
SwissprotQ9FNV91e-41MY113_ARATH; Transcription factor MYB113
TrEMBLA0A089G5X73e-45A0A089G5X7_BRACM; Anthocyanin R2R3-MYB transcription factor
TrEMBLA0A0H3XWN66e-45A0A0H3XWN6_RAPSA; Anthocyanin regulator
STRINGCagra.0463s0005.1.p1e-92(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-44myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]