PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0463s0007.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MYB
Protein Properties Length: 224aa    MW: 25130.1 Da    PI: 5.6451
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0463s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-151259148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEd l  ++v ++G g W++I+ + g++R++k+c++rw++yl
  Cagra.0463s0007.1.p 12 RGAWTAEEDSLSRECVDKYGEGKWHLIPLRTGLNRCRKSCRLRWLNYL 59
                         89********************************************97 PP
2Myb_DNA-binding45.41.8e-1465109147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rgr   +E +l+++++++lG++ W++Ia +++ gRt++++k++w+++
  Cagra.0463s0007.1.p  65 RGRLNSDEIDLIIRLHNLLGNR-WSLIAGRIP-GRTANDIKNYWNTH 109
                          788899****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-19661IPR009057Homeodomain-like
PROSITE profilePS5129424.638763IPR017930Myb domain
SuperFamilySSF466891.2E-259106IPR009057Homeodomain-like
SMARTSM007171.2E-111161IPR001005SANT/Myb domain
PfamPF002491.0E-131259IPR001005SANT/Myb domain
CDDcd001679.38E-101459No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2062113IPR009057Homeodomain-like
SMARTSM007174.5E-1164112IPR001005SANT/Myb domain
PROSITE profilePS5129415.83164114IPR017930Myb domain
PfamPF002498.1E-1366109IPR001005SANT/Myb domain
CDDcd001678.01E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDAPMSNNGL RRGAWTAEED SLSRECVDKY GEGKWHLIPL RTGLNRCRKS CRLRWLNYLK  60
PGIKRGRLNS DEIDLIIRLH NLLGNRWSLI AGRIPGRTAN DIKNYWNTHF CKKQDMSGKN  120
KMGERNPSSS GATPPPQIDV INPQHGSFSD NNSCSHVNGF PEVELGGIIN TDHIVTCDQD  180
EEKYGSTNNE MVGESVWWES WLEDSVEVDP EAMITDEAGP SSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21101155109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0463s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513543.11e-122PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV93e-82MY113_ARATH; Transcription factor MYB113
TrEMBLE5D8F52e-87E5D8F5_BRAOB; MYB2
STRINGCagra.0463s0007.1.p1e-165(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-84myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]