PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0534s0009.2.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

M-type_MADS

Protein Properties

Length: 370aa MW: 42023.2 Da PI: 7.1698

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0534s0009.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.3	1.3e-20	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR++gilKKA+ELS+LCd+++ +++fs+tgk Cagra.0534s0009.2.p 10 KLENTNGRQNTFAKRKHGILKKANELSILCDIDIVLLMFSPTGK 53 6799**************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.3E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.857	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.75E-25	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.90E-26	2	81	No hit	No description
PRINTS	PR00404	4.7E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-17	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQNT FAKRKHGILK KANELSILCD IDIVLLMFSP TGKAALCCGT 60 RSMEEVIAKF SQVTPQERTK RKFESLENLK KTFQKLDHHV NIREFISSSN STVEDLSTQA 120 RILQARISEI HGRLSYWTEP DKINNIEHLG QLEISIRQSI DQLRAHKEHF GQQQHAMQIE 180 NANFVKDWST CSLQDGIQIP LEQQLQSMSW ILNSNPTNIV TDEHKLIPQR EVECSASSSF 240 GSYPGYFGTG KSPEITISGQ ETSFLDELNT GQMKPQLSSH QQFANNITAY NPNLQNDLNH 300 HQTLPPPQVY IPMNQREYHM NEYFEAPPPG SSAYNNNTNQ TRFGSSSSSL PCSLSMFDEY 360 LFSQMQQPN*

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQNT FAKRKHGILK KANELSILCD IDIVLLMFSP TGKAALCCGT  60
RSMEEVIAKF SQVTPQERTK RKFESLENLK KTFQKLDHHV NIREFISSSN STVEDLSTQA  120
RILQARISEI HGRLSYWTEP DKINNIEHLG QLEISIRQSI DQLRAHKEHF GQQQHAMQIE  180
NANFVKDWST CSLQDGIQIP LEQQLQSMSW ILNSNPTNIV TDEHKLIPQR EVECSASSSF  240
GSYPGYFGTG KSPEITISGQ ETSFLDELNT GQMKPQLSSH QQFANNITAY NPNLQNDLNH  300
HQTLPPPQVY IPMNQREYHM NEYFEAPPPG SSAYNNNTNQ TRFGSSSSSL PCSLSMFDEY  360
LFSQMQQPN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-12	1	91	1	90	MEF2 CHIMERA
6byy_B	1e-12	1	91	1	90	MEF2 CHIMERA
6byy_C	1e-12	1	91	1	90	MEF2 CHIMERA
6byy_D	1e-12	1	91	1	90	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0534s0009.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446459	0.0	DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBank	DQ652954	0.0	DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023637840.1	0.0	agamous-like MADS-box protein AGL30 isoform X2
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	R0HJZ3	0.0	R0HJZ3_9BRAS; Uncharacterized protein
STRING	Cagra.0534s0009.1.p	0.0	(Capsella grandiflora)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	0.0	AGAMOUS-like 30

Link Out ? help Back to Top
Phytozome	Cagra.0534s0009.2.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]