PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0551s0039.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C3H
Protein Properties Length: 472aa    MW: 50409.9 Da    PI: 8.6688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0551s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-095074327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          + C +++rtG C yG rC+++H++
  Cagra.0551s0039.1.p 50 APDCAYYMRTGVCGYGHRCRYNHPR 74
                         589********************96 PP
2zf-CCCH40.44.7e-1395119327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+f+++tGtCk+G++CkF+H++
  Cagra.0551s0039.1.p  95 EPPCQFYLKTGTCKFGASCKFHHPK 119
                          79*********************96 PP
3zf-CCCH36.21e-11141165327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          + +C+++++tG+Ck+G +CkF+H++
  Cagra.0551s0039.1.p 141 ENECSYYLKTGQCKFGITCKFHHPQ 165
                          678********************97 PP
4zf-CCCH37.83.2e-12292318127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C+++++tG Ck+G +CkF+H++
  Cagra.0551s0039.1.p 292 PGEPECQYYLKTGDCKFGTSCKFHHPR 318
                          5799*********************96 PP
5zf-CCCH32.41.6e-10339364227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +  +C f+ ++G+Ck+G++CkF H++
  Cagra.0551s0039.1.p 339 GVQRCTFYVQNGFCKFGSTCKFDHPM 364
                          6779********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1884775IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-44774IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-75074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-45374IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-792119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.90192120IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1095119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-597118IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995138166IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-9141165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5142166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4144164IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356291319IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9293318IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6296320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5297319IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23337365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6339368IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8339364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5343364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDLYARNPPI NGSQSAQAPD WIPADSDTGL EESMWRLGLG SETYPERPGA PDCAYYMRTG  60
VCGYGHRCRY NHPRDRASVE ATVRATGQYP ERIGEPPCQF YLKTGTCKFG ASCKFHHPKN  120
AGGSMSHVPL NIYGYPVREG ENECSYYLKT GQCKFGITCK FHHPQPAGTT VPPPPASAPQ  180
FYPSVQSLMP DQYGGPSSSL RVARTLLPGS YMQGAYGPML LTPGVVPIPG WSPYSAPVSP  240
ALSPGAQHAV GATSLYGVTQ LSSTTPSLPG VYPSLSSPTG VIQKDQAFPE RPGEPECQYY  300
LKTGDCKFGT SCKFHHPRDR IPPRANCILS PIGLPLRPGV QRCTFYVQNG FCKFGSTCKF  360
DHPMGNIRYN PSASSLADAP VAPYPVSSLL GGGLAAAPSS SSTELITGGA KDPYLTGLPS  420
SRSTSSISAG LIFSQSGGSI PFSELQLSSQ TSLPLTGSRI TRQGREIRRS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0551s0039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294141.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639387.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639388.10.0zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_023639389.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGCagra.0551s0039.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein