PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cagra.0562s0034.1.p

Organism

Capsella grandiflora

Taxonomic ID

264402

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

SRS

Protein Properties

Length: 182aa MW: 20098.1 Da PI: 10.4468

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cagra.0562s0034.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	153.9	1.1e-47	34	170	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++ C+dCGn+akk+C +eRCRtCCksrg++CathvkstWvp++ r+ +++ s+rk++lk++kqs+++ + +++ Cagra.0562s0034.1.p 34 AEKVCRDCGNRAKKECLFERCRTCCKSRGYNCATHVKSTWVPSSAIRS----------------SSSPSERKKKLKIDKQSSTNVSLVQT 107 6789*************************************99988................35567778888889999999999999 PP DUF702 94 aeskkeletss.lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++s++e ++++ lP +++++avf+++rv+++++ +++e++Yq++v+i+GhvfkG+L+++G+++ Cagra.0562s0034.1.p 108 TSSRQERSFKEgLPGKIEAPAVFKRTRVTAISNnEQAEIGYQATVTISGHVFKGFLHYYGVDH 170 999998888777***************9868899*********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.8E-42	36	169	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.8E-27	37	78	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.7E-29	120	168	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MLGLRNIILL SPPPQIARPS PSPVNLAAVE ENKAEKVCRD CGNRAKKECL FERCRTCCKS 60 RGYNCATHVK STWVPSSAIR SSSSPSERKK KLKIDKQSST NVSLVQTTSS RQERSFKEGL 120 PGKIEAPAVF KRTRVTAISN NEQAEIGYQA TVTISGHVFK GFLHYYGVDH NKAFPCLSQK 180 R*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM) (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Cagra.0562s0034.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY052675	0.0	AY052675.1 Arabidopsis thaliana AT3g54430/T12E18_120 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006291913.1	1e-132	protein SHI RELATED SEQUENCE 6
Swissprot	Q9M2U4	1e-110	SRS6_ARATH; Protein SHI RELATED SEQUENCE 6
TrEMBL	R0FRH6	1e-131	R0FRH6_9BRAS; Uncharacterized protein
STRING	Cagra.0562s0034.1.p	1e-132	(Capsella grandiflora)
STRING	XP_006291913.1	1e-132	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54430.1	1e-102	SHI-related sequence 6

Link Out ? help Back to Top
Phytozome	Cagra.0562s0034.1.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]