PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0568s0175.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 195aa    MW: 21152.7 Da    PI: 4.9656
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0568s0175.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-161362155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa a++ a+ +l+g
  Cagra.0568s0175.1.p 13 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTAEMAATAYDVAAMALKG 62
                         68****9.55.6*********843...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-101362IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-181472IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.7E-281472IPR001471AP2/ERF domain
SMARTSM003804.2E-291476IPR001471AP2/ERF domain
PROSITE profilePS5103220.3361470IPR001471AP2/ERF domain
CDDcd000183.67E-281572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSSAGLASRK KDPVYRGIRC RSGKWVSEIR EPRKTTRIWL GTYPTAEMAA TAYDVAAMAL  60
KGREAVLNFP ESAMSYPVPV STSAADIRTA AAAAASVKGC TEYGEEVEKE SKKKKKKTSS  120
SSSKSRASEC HVDNDVASSS WCGTEFMDED EVLNMPNLLA NMAEGMMLAP PSWMDSRPSD  180
DSPENSNDED LWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14171173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0568s0175.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633148.11e-101ethylene-responsive transcription factor ERF027
SwissprotQ38Q393e-84ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLR0IKU51e-100R0IKU5_9BRAS; Uncharacterized protein
STRINGCagra.0568s0175.1.p1e-140(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.13e-64ERF family protein