PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.0596s0010.1.p
Organism
Capsella grandiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 258aa    MW: 29250.8 Da    PI: 8.9308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.0596s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.12.4e-51141381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk+kv +++l++ ++i+e+d+++++PwdLp +    +ke yfFs+r+ ky++g+r+nrat sgyWkatg dk
  Cagra.0596s0010.1.p  14 LPPGFRFHPTDEELVVQYLKRKVCSSPLPA-SIIPEFDVCRADPWDLPGN---LDKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDK 99 
                          79****************************.89***************44...5789********************************9 PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v+++ +++ vglkktLvfykg+ p+g++tdW+mheyrl
  Cagra.0596s0010.1.p 100 RVVTSrGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                          9998857777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6010160IPR003441NAC domain
PROSITE profilePS5100558.66614160IPR003441NAC domain
PfamPF023653.1E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDNVKLVKNG VLRLPPGFRF HPTDEELVVQ YLKRKVCSSP LPASIIPEFD VCRADPWDLP  60
GNLDKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ NWVLCRIFLK KRAGNKNDDD DGDSRNLRYI  180
NNNSNDQIDI ITTTDQTNDD DKTKPIFFDF MRKERTTDLN LMPSSPCSDH ASSGVTTEIF  240
SSSDEETSSC NSFRRHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-521216615171NO APICAL MERISTEM PROTEIN
1ut4_B6e-521216615171NO APICAL MERISTEM PROTEIN
1ut7_A6e-521216615171NO APICAL MERISTEM PROTEIN
1ut7_B6e-521216615171NO APICAL MERISTEM PROTEIN
3swm_A6e-521216618174NAC domain-containing protein 19
3swm_B6e-521216618174NAC domain-containing protein 19
3swm_C6e-521216618174NAC domain-containing protein 19
3swm_D6e-521216618174NAC domain-containing protein 19
3swp_A6e-521216618174NAC domain-containing protein 19
3swp_B6e-521216618174NAC domain-containing protein 19
3swp_C6e-521216618174NAC domain-containing protein 19
3swp_D6e-521216618174NAC domain-containing protein 19
4dul_A6e-521216615171NAC domain-containing protein 19
4dul_B6e-521216615171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCagra.0596s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3857340.0AF385734.1 Arabidopsis thaliana AT5g13180/T19L5_140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289127.10.0NAC domain-containing protein 83
SwissprotQ9FY931e-155NAC83_ARATH; NAC domain-containing protein 83
TrEMBLR0HAM40.0R0HAM4_9BRAS; Uncharacterized protein
STRINGCagra.0596s0010.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-134NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]